Strain Fitness in Escherichia coli BL21 around ECD_00383

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00382 and ECD_00383 are separated by 21 nucleotidesECD_00383 and ECD_00384 are separated by 461 nucleotides ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323 _00382 ECD_00383: ECD_00383 - cytochrome o ubiquinol oxidase subunit II, at 418,345 to 419,292 _00383 ECD_00384: ECD_00384 - muropeptide transporter, at 419,754 to 421,229 _00384 Position (kb) 418 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 417.358 kb on - strand, within ECD_00382at 417.384 kb on + strand, within ECD_00382at 417.500 kb on + strand, within ECD_00382at 417.500 kb on + strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.552 kb on - strand, within ECD_00382at 417.606 kb on + strand, within ECD_00382at 417.614 kb on - strand, within ECD_00382at 417.728 kb on - strand, within ECD_00382at 417.728 kb on - strand, within ECD_00382at 417.730 kb on - strand, within ECD_00382at 417.782 kb on + strand, within ECD_00382at 417.783 kb on - strand, within ECD_00382at 417.783 kb on - strand, within ECD_00382at 417.783 kb on - strand, within ECD_00382at 417.880 kb on - strand, within ECD_00382at 417.893 kb on - strand, within ECD_00382at 417.997 kb on - strand, within ECD_00382at 417.997 kb on - strand, within ECD_00382at 418.028 kb on + strand, within ECD_00382at 418.140 kb on + strandat 418.140 kb on + strandat 418.140 kb on + strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.142 kb on + strandat 418.142 kb on + strandat 418.142 kb on + strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.162 kb on - strandat 418.196 kb on + strandat 418.197 kb on - strandat 418.197 kb on - strandat 418.214 kb on + strandat 418.214 kb on + strandat 418.279 kb on - strandat 418.279 kb on - strandat 418.327 kb on + strandat 418.450 kb on - strand, within ECD_00383at 418.499 kb on + strand, within ECD_00383at 418.514 kb on + strand, within ECD_00383at 418.515 kb on - strand, within ECD_00383at 418.626 kb on + strand, within ECD_00383at 418.626 kb on + strand, within ECD_00383at 418.627 kb on - strand, within ECD_00383at 418.627 kb on - strand, within ECD_00383at 418.677 kb on + strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 419.000 kb on - strand, within ECD_00383at 419.000 kb on - strand, within ECD_00383at 419.004 kb on + strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.009 kb on - strand, within ECD_00383at 419.060 kb on + strand, within ECD_00383at 419.061 kb on - strand, within ECD_00383at 419.061 kb on - strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.065 kb on - strand, within ECD_00383at 419.204 kb on - strandat 419.234 kb on - strandat 419.234 kb on - strandat 419.249 kb on - strandat 419.358 kb on - strandat 419.362 kb on + strandat 419.415 kb on - strandat 419.415 kb on - strandat 419.428 kb on + strandat 419.429 kb on - strandat 419.827 kb on - strandat 419.902 kb on - strand, within ECD_00384at 420.005 kb on + strand, within ECD_00384at 420.008 kb on - strand, within ECD_00384at 420.072 kb on + strand, within ECD_00384at 420.076 kb on + strand, within ECD_00384at 420.076 kb on + strand, within ECD_00384at 420.077 kb on - strand, within ECD_00384at 420.131 kb on - strand, within ECD_00384at 420.142 kb on - strand, within ECD_00384at 420.191 kb on + strand, within ECD_00384at 420.192 kb on - strand, within ECD_00384at 420.195 kb on - strand, within ECD_00384at 420.195 kb on - strand, within ECD_00384at 420.281 kb on - strand, within ECD_00384

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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417,358 - ECD_00382 0.52 +0.1
417,384 + ECD_00382 0.53 +0.8
417,500 + ECD_00382 0.59 +1.0
417,500 + ECD_00382 0.59 +1.3
417,501 - ECD_00382 0.59 +1.2
417,501 - ECD_00382 0.59 +0.7
417,501 - ECD_00382 0.59 +0.9
417,501 - ECD_00382 0.59 +0.9
417,501 - ECD_00382 0.59 +2.7
417,501 - ECD_00382 0.59 +1.8
417,501 - ECD_00382 0.59 +0.9
417,501 - ECD_00382 0.59 +0.7
417,552 - ECD_00382 0.61 +1.1
417,606 + ECD_00382 0.64 +0.0
417,614 - ECD_00382 0.64 +1.2
417,728 - ECD_00382 0.70 +0.9
417,728 - ECD_00382 0.70 +0.7
417,730 - ECD_00382 0.70 +0.7
417,782 + ECD_00382 0.73 +0.5
417,783 - ECD_00382 0.73 +1.6
417,783 - ECD_00382 0.73 +1.4
417,783 - ECD_00382 0.73 +1.0
417,880 - ECD_00382 0.78 +0.9
417,893 - ECD_00382 0.78 +0.3
417,997 - ECD_00382 0.84 +0.6
417,997 - ECD_00382 0.84 +1.3
418,028 + ECD_00382 0.85 +1.1
418,140 + +1.0
418,140 + +0.3
418,140 + -0.1
418,141 - +0.7
418,141 - +0.8
418,141 - +2.2
418,141 - +0.8
418,141 - +0.7
418,141 - +1.3
418,142 + +0.9
418,142 + +0.3
418,142 + +0.1
418,143 - +0.6
418,143 - +1.1
418,143 - +0.7
418,143 - +0.8
418,143 - +0.3
418,143 - +1.3
418,143 - +1.2
418,143 - +0.6
418,143 - +1.3
418,143 - +0.4
418,162 - +0.3
418,196 + -0.7
418,197 - +1.3
418,197 - +1.1
418,214 + -0.2
418,214 + +0.9
418,279 - +0.7
418,279 - -1.5
418,327 + +1.3
418,450 - ECD_00383 0.11 +1.0
418,499 + ECD_00383 0.16 +0.7
418,514 + ECD_00383 0.18 -0.1
418,515 - ECD_00383 0.18 +0.9
418,626 + ECD_00383 0.30 +0.4
418,626 + ECD_00383 0.30 +0.2
418,627 - ECD_00383 0.30 +0.5
418,627 - ECD_00383 0.30 +1.0
418,677 + ECD_00383 0.35 +1.5
418,686 - ECD_00383 0.36 +0.4
418,686 - ECD_00383 0.36 +0.8
418,686 - ECD_00383 0.36 +0.9
418,686 - ECD_00383 0.36 +0.9
418,686 - ECD_00383 0.36 +1.1
419,000 - ECD_00383 0.69 +1.7
419,000 - ECD_00383 0.69 +0.6
419,004 + ECD_00383 0.70 +0.9
419,005 - ECD_00383 0.70 +0.8
419,005 - ECD_00383 0.70 +0.8
419,005 - ECD_00383 0.70 +0.9
419,009 - ECD_00383 0.70 +0.6
419,060 + ECD_00383 0.75 +1.1
419,061 - ECD_00383 0.76 +1.3
419,061 - ECD_00383 0.76 +0.7
419,064 + ECD_00383 0.76 +0.6
419,064 + ECD_00383 0.76 -0.6
419,064 + ECD_00383 0.76 -0.1
419,065 - ECD_00383 0.76 +0.2
419,204 - +1.1
419,234 - +1.3
419,234 - +0.6
419,249 - +0.8
419,358 - +0.8
419,362 + +0.9
419,415 - -2.7
419,415 - -2.9
419,428 + -0.8
419,429 - -0.3
419,827 - +0.3
419,902 - ECD_00384 0.10 -1.5
420,005 + ECD_00384 0.17 -1.5
420,008 - ECD_00384 0.17 +0.0
420,072 + ECD_00384 0.22 -3.1
420,076 + ECD_00384 0.22 -1.6
420,076 + ECD_00384 0.22 -1.7
420,077 - ECD_00384 0.22 -1.1
420,131 - ECD_00384 0.26 -2.4
420,142 - ECD_00384 0.26 -1.3
420,191 + ECD_00384 0.30 -2.3
420,192 - ECD_00384 0.30 -1.5
420,195 - ECD_00384 0.30 -1.9
420,195 - ECD_00384 0.30 -1.2
420,281 - ECD_00384 0.36 +0.8

Or see this region's nucleotide sequence