Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00379 and ECD_00380 are separated by 11 nucleotides ECD_00380 and ECD_00381 overlap by 1 nucleotides ECD_00381 and ECD_00382 overlap by 11 nucleotides
ECD_00379: ECD_00379 - protoheme IX farnesyltransferase, at 414,497 to 415,387
_00379
ECD_00380: ECD_00380 - cytochrome o ubiquinol oxidase subunit IV, at 415,399 to 415,728
_00380
ECD_00381: ECD_00381 - cytochrome o ubiquinol oxidase subunit III, at 415,728 to 416,342
_00381
ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323
_00382
Position (kb) 415
416
417 Strain fitness (log2 ratio) -1
0
1
2 at 414.751 kb on + strand, within ECD_00379 at 414.753 kb on + strand, within ECD_00379 at 414.791 kb on + strand, within ECD_00379 at 414.856 kb on - strand, within ECD_00379 at 415.008 kb on + strand, within ECD_00379 at 415.008 kb on + strand, within ECD_00379 at 415.009 kb on - strand, within ECD_00379 at 415.017 kb on + strand, within ECD_00379 at 415.018 kb on - strand, within ECD_00379 at 415.018 kb on - strand, within ECD_00379 at 415.029 kb on + strand, within ECD_00379 at 415.030 kb on - strand, within ECD_00379 at 415.094 kb on - strand, within ECD_00379 at 415.213 kb on - strand, within ECD_00379 at 415.266 kb on + strand, within ECD_00379 at 415.271 kb on - strand, within ECD_00379 at 415.379 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.451 kb on - strand, within ECD_00380 at 415.716 kb on + strand at 415.716 kb on + strand at 415.729 kb on + strand at 415.730 kb on - strand at 415.730 kb on - strand at 415.858 kb on - strand, within ECD_00381 at 416.049 kb on - strand, within ECD_00381 at 416.071 kb on + strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.096 kb on - strand, within ECD_00381 at 416.162 kb on + strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.208 kb on - strand, within ECD_00381 at 416.330 kb on + strand at 416.358 kb on + strand at 416.359 kb on - strand at 416.361 kb on + strand at 416.362 kb on - strand at 416.414 kb on + strand at 416.415 kb on - strand at 416.415 kb on - strand at 416.415 kb on - strand at 416.417 kb on + strand at 416.496 kb on + strand at 416.572 kb on - strand, within ECD_00382 at 416.601 kb on + strand, within ECD_00382 at 416.603 kb on + strand, within ECD_00382 at 416.604 kb on - strand, within ECD_00382 at 416.676 kb on - strand, within ECD_00382 at 416.775 kb on - strand, within ECD_00382 at 416.920 kb on - strand, within ECD_00382 at 416.920 kb on - strand, within ECD_00382 at 417.212 kb on + strand, within ECD_00382 at 417.212 kb on + strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 414,751 + ECD_00379 0.29 +0.7 414,753 + ECD_00379 0.29 +0.5 414,791 + ECD_00379 0.33 +0.7 414,856 - ECD_00379 0.40 +0.8 415,008 + ECD_00379 0.57 -0.2 415,008 + ECD_00379 0.57 +0.2 415,009 - ECD_00379 0.57 +0.8 415,017 + ECD_00379 0.58 -0.1 415,018 - ECD_00379 0.58 +0.4 415,018 - ECD_00379 0.58 +1.5 415,029 + ECD_00379 0.60 +0.1 415,030 - ECD_00379 0.60 +1.2 415,094 - ECD_00379 0.67 +0.3 415,213 - ECD_00379 0.80 +1.5 415,266 + ECD_00379 0.86 +0.6 415,271 - ECD_00379 0.87 +0.5 415,379 - +0.7 415,401 - +1.8 415,401 - +1.0 415,401 - +1.0 415,419 - +1.5 415,419 - +0.8 415,419 - +0.9 415,419 - +1.5 415,451 - ECD_00380 0.16 +0.7 415,716 + +1.1 415,716 + -0.2 415,729 + +0.1 415,730 - +1.6 415,730 - +0.7 415,858 - ECD_00381 0.21 +1.3 416,049 - ECD_00381 0.52 +1.2 416,071 + ECD_00381 0.56 +1.9 416,072 - ECD_00381 0.56 +1.2 416,072 - ECD_00381 0.56 +0.7 416,096 - ECD_00381 0.60 +1.2 416,162 + ECD_00381 0.71 +0.9 416,204 - ECD_00381 0.77 +0.1 416,204 - ECD_00381 0.77 +1.2 416,207 + ECD_00381 0.78 +1.5 416,207 + ECD_00381 0.78 +0.7 416,207 + ECD_00381 0.78 +0.7 416,208 - ECD_00381 0.78 +0.3 416,330 + -0.5 416,358 + +0.6 416,359 - +1.2 416,361 + +0.0 416,362 - +0.8 416,414 + +0.6 416,415 - +1.2 416,415 - +1.2 416,415 - +0.9 416,417 + -0.0 416,496 + -0.4 416,572 - ECD_00382 0.12 +1.6 416,601 + ECD_00382 0.14 +0.6 416,603 + ECD_00382 0.14 -0.0 416,604 - ECD_00382 0.14 +0.7 416,676 - ECD_00382 0.17 +0.5 416,775 - ECD_00382 0.22 +0.0 416,920 - ECD_00382 0.30 +1.2 416,920 - ECD_00382 0.30 +1.6 417,212 + ECD_00382 0.44 +0.3 417,212 + ECD_00382 0.44 +0.7 417,213 - ECD_00382 0.44 +0.2 417,213 - ECD_00382 0.44 +0.8 417,213 - ECD_00382 0.44 +0.4 417,213 - ECD_00382 0.44 +1.1 417,213 - ECD_00382 0.44 +1.4 417,213 - ECD_00382 0.44 +1.5 417,213 - ECD_00382 0.44 +1.3
Or see this region's nucleotide sequence