Strain Fitness in Escherichia coli BL21 around ECD_00204

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00202 and ECD_00203 are separated by 3 nucleotidesECD_00203 and ECD_00204 are separated by 47 nucleotidesECD_00204 and ECD_00205 are separated by 71 nucleotidesECD_00205 and ECD_00206 are separated by 33 nucleotides ECD_00202: ECD_00202 - endo/exonuclease/phosphatase family protein, at 234,049 to 234,849 _00202 ECD_00203: ECD_00203 - putative S-adenosyl-L-methionine-dependent methyltransferase, at 234,853 to 235,476 _00203 ECD_00204: ECD_00204 - putative membrane-bound lytic murein transglycosylase D, at 235,524 to 236,882 _00204 ECD_00205: ECD_00205 - hydroxyacylglutathione hydrolase, at 236,954 to 237,709 _00205 ECD_00206: ECD_00206 - putative S-adenosyl-L-methionine-dependent methyltransferase, at 237,743 to 238,465 _00206 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.550 kb on - strand, within ECD_00202at 234.552 kb on + strand, within ECD_00202at 234.552 kb on + strand, within ECD_00202at 234.553 kb on - strand, within ECD_00202at 234.553 kb on - strand, within ECD_00202at 234.582 kb on - strand, within ECD_00202at 234.636 kb on + strand, within ECD_00202at 234.654 kb on - strand, within ECD_00202at 234.848 kb on - strandat 234.852 kb on + strandat 234.852 kb on + strandat 234.919 kb on + strand, within ECD_00203at 234.984 kb on + strand, within ECD_00203at 234.984 kb on + strand, within ECD_00203at 235.004 kb on - strand, within ECD_00203at 235.281 kb on + strand, within ECD_00203at 235.282 kb on - strand, within ECD_00203at 235.286 kb on + strand, within ECD_00203at 235.296 kb on + strand, within ECD_00203at 235.356 kb on - strand, within ECD_00203at 235.362 kb on + strand, within ECD_00203at 235.455 kb on - strandat 235.464 kb on + strandat 235.510 kb on + strandat 235.511 kb on - strandat 235.679 kb on - strand, within ECD_00204at 235.679 kb on - strand, within ECD_00204at 235.679 kb on - strand, within ECD_00204at 235.683 kb on - strand, within ECD_00204at 235.683 kb on - strand, within ECD_00204at 235.683 kb on - strand, within ECD_00204at 235.683 kb on - strand, within ECD_00204at 235.761 kb on - strand, within ECD_00204at 235.804 kb on - strand, within ECD_00204at 235.849 kb on - strand, within ECD_00204at 235.849 kb on - strand, within ECD_00204at 235.849 kb on - strand, within ECD_00204at 235.856 kb on - strand, within ECD_00204at 235.878 kb on - strand, within ECD_00204at 235.878 kb on - strand, within ECD_00204at 235.903 kb on - strand, within ECD_00204at 236.055 kb on - strand, within ECD_00204at 236.084 kb on + strand, within ECD_00204at 236.137 kb on - strand, within ECD_00204at 236.137 kb on - strand, within ECD_00204at 236.186 kb on + strand, within ECD_00204at 236.195 kb on - strand, within ECD_00204at 236.195 kb on - strand, within ECD_00204at 236.195 kb on - strand, within ECD_00204at 236.297 kb on + strand, within ECD_00204at 236.300 kb on - strand, within ECD_00204at 236.300 kb on - strand, within ECD_00204at 236.358 kb on - strand, within ECD_00204at 236.405 kb on - strand, within ECD_00204at 236.405 kb on - strand, within ECD_00204at 236.524 kb on - strand, within ECD_00204at 236.524 kb on - strand, within ECD_00204at 236.524 kb on - strand, within ECD_00204at 236.524 kb on - strand, within ECD_00204at 236.524 kb on - strand, within ECD_00204at 236.524 kb on - strand, within ECD_00204at 236.527 kb on - strand, within ECD_00204at 236.547 kb on - strand, within ECD_00204at 236.547 kb on - strand, within ECD_00204at 236.579 kb on + strand, within ECD_00204at 236.580 kb on - strand, within ECD_00204at 236.580 kb on - strand, within ECD_00204at 236.580 kb on - strand, within ECD_00204at 236.580 kb on - strand, within ECD_00204at 236.582 kb on - strand, within ECD_00204at 236.582 kb on - strand, within ECD_00204at 236.582 kb on - strand, within ECD_00204at 236.622 kb on - strand, within ECD_00204at 236.727 kb on - strand, within ECD_00204at 236.895 kb on - strandat 236.920 kb on - strandat 236.963 kb on - strandat 237.155 kb on + strand, within ECD_00205at 237.245 kb on + strand, within ECD_00205at 237.446 kb on + strand, within ECD_00205at 237.486 kb on + strand, within ECD_00205at 237.486 kb on + strand, within ECD_00205at 237.564 kb on - strand, within ECD_00205at 237.584 kb on - strand, within ECD_00205at 237.673 kb on - strandat 237.673 kb on - strandat 237.673 kb on - strandat 237.694 kb on + strandat 237.701 kb on - strandat 237.701 kb on - strandat 237.701 kb on - strandat 237.715 kb on - strandat 237.715 kb on - strandat 237.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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234,550 - ECD_00202 0.63 -0.5
234,552 + ECD_00202 0.63 -2.0
234,552 + ECD_00202 0.63 -2.8
234,553 - ECD_00202 0.63 -0.8
234,553 - ECD_00202 0.63 -0.9
234,582 - ECD_00202 0.67 -2.4
234,636 + ECD_00202 0.73 -2.3
234,654 - ECD_00202 0.76 -2.6
234,848 - -0.9
234,852 + -0.9
234,852 + -1.0
234,919 + ECD_00203 0.11 -0.2
234,984 + ECD_00203 0.21 -1.1
234,984 + ECD_00203 0.21 -0.6
235,004 - ECD_00203 0.24 -1.6
235,281 + ECD_00203 0.69 -1.2
235,282 - ECD_00203 0.69 -0.9
235,286 + ECD_00203 0.69 -1.2
235,296 + ECD_00203 0.71 -1.2
235,356 - ECD_00203 0.81 -1.0
235,362 + ECD_00203 0.82 -0.2
235,455 - -1.8
235,464 + -0.8
235,510 + -2.4
235,511 - +0.3
235,679 - ECD_00204 0.11 +1.0
235,679 - ECD_00204 0.11 +0.8
235,679 - ECD_00204 0.11 +1.3
235,683 - ECD_00204 0.12 +0.1
235,683 - ECD_00204 0.12 +0.3
235,683 - ECD_00204 0.12 +0.9
235,683 - ECD_00204 0.12 +0.6
235,761 - ECD_00204 0.17 +0.7
235,804 - ECD_00204 0.21 -0.4
235,849 - ECD_00204 0.24 +2.7
235,849 - ECD_00204 0.24 +1.1
235,849 - ECD_00204 0.24 +0.2
235,856 - ECD_00204 0.24 -0.2
235,878 - ECD_00204 0.26 +0.4
235,878 - ECD_00204 0.26 +0.3
235,903 - ECD_00204 0.28 +0.0
236,055 - ECD_00204 0.39 +1.1
236,084 + ECD_00204 0.41 -1.4
236,137 - ECD_00204 0.45 +0.5
236,137 - ECD_00204 0.45 +0.6
236,186 + ECD_00204 0.49 -2.2
236,195 - ECD_00204 0.49 -0.1
236,195 - ECD_00204 0.49 +0.6
236,195 - ECD_00204 0.49 +0.6
236,297 + ECD_00204 0.57 +0.7
236,300 - ECD_00204 0.57 +0.6
236,300 - ECD_00204 0.57 +0.7
236,358 - ECD_00204 0.61 +0.8
236,405 - ECD_00204 0.65 +0.6
236,405 - ECD_00204 0.65 +0.7
236,524 - ECD_00204 0.74 +1.1
236,524 - ECD_00204 0.74 +0.7
236,524 - ECD_00204 0.74 +0.7
236,524 - ECD_00204 0.74 +0.8
236,524 - ECD_00204 0.74 +2.0
236,524 - ECD_00204 0.74 +0.5
236,527 - ECD_00204 0.74 +0.5
236,547 - ECD_00204 0.75 -0.5
236,547 - ECD_00204 0.75 +0.9
236,579 + ECD_00204 0.78 -0.5
236,580 - ECD_00204 0.78 +0.5
236,580 - ECD_00204 0.78 +0.5
236,580 - ECD_00204 0.78 +0.5
236,580 - ECD_00204 0.78 +1.1
236,582 - ECD_00204 0.78 +1.1
236,582 - ECD_00204 0.78 +0.4
236,582 - ECD_00204 0.78 +0.7
236,622 - ECD_00204 0.81 +0.4
236,727 - ECD_00204 0.89 +0.5
236,895 - +0.2
236,920 - +0.3
236,963 - -0.1
237,155 + ECD_00205 0.27 -1.3
237,245 + ECD_00205 0.38 -0.6
237,446 + ECD_00205 0.65 +0.1
237,486 + ECD_00205 0.70 +0.9
237,486 + ECD_00205 0.70 -0.0
237,564 - ECD_00205 0.81 -0.3
237,584 - ECD_00205 0.83 +0.3
237,673 - +0.1
237,673 - -0.6
237,673 - +0.2
237,694 + -0.7
237,701 - +0.8
237,701 - -0.5
237,701 - +1.1
237,715 - -0.3
237,715 - -0.1
237,721 + +0.2

Or see this region's nucleotide sequence