Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6105 and Atu6106 overlap by 4 nucleotides Atu6106 and Atu6107 overlap by 29 nucleotides Atu6107 and Atu6108 are separated by 19 nucleotides Atu6108 and Atu6109 are separated by 517 nucleotides
Atu6105: Atu6105 - conserved hypothetical protein, at 128,218 to 129,105
Atu6105
Atu6106: Atu6106 - conserved hypothetical protein, at 129,102 to 129,410
Atu6106
Atu6107: Atu6107 - hypothetical protein, at 129,382 to 129,606
Atu6107
Atu6108: Atu6108 - alkylphosphonate uptake protein, at 129,626 to 129,931
Atu6108
Atu6109: Atu6109 - conserved hypothetical protein, at 130,449 to 131,048
Atu6109
Position (kb) 129
130 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 128.669 kb on - strand, within Atu6105 at 128.669 kb on - strand, within Atu6105 at 128.700 kb on - strand, within Atu6105 at 128.723 kb on + strand, within Atu6105 at 128.731 kb on - strand, within Atu6105 at 128.731 kb on - strand, within Atu6105 at 128.731 kb on - strand, within Atu6105 at 128.749 kb on - strand, within Atu6105 at 128.751 kb on + strand, within Atu6105 at 128.759 kb on - strand, within Atu6105 at 128.768 kb on + strand, within Atu6105 at 128.770 kb on + strand, within Atu6105 at 128.836 kb on + strand, within Atu6105 at 128.906 kb on - strand, within Atu6105 at 128.924 kb on + strand, within Atu6105 at 129.052 kb on + strand at 129.065 kb on + strand at 129.065 kb on + strand at 129.071 kb on + strand at 129.088 kb on - strand at 129.221 kb on - strand, within Atu6106 at 129.273 kb on + strand, within Atu6106 at 129.274 kb on - strand, within Atu6106 at 129.307 kb on - strand, within Atu6106 at 129.338 kb on + strand, within Atu6106 at 129.404 kb on + strand at 129.415 kb on + strand, within Atu6107 at 129.464 kb on - strand, within Atu6107 at 129.492 kb on + strand, within Atu6107 at 129.500 kb on - strand, within Atu6107 at 129.510 kb on - strand, within Atu6107 at 129.614 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.627 kb on - strand at 129.627 kb on - strand at 129.627 kb on - strand at 129.663 kb on - strand, within Atu6108 at 129.702 kb on - strand, within Atu6108 at 129.729 kb on + strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.747 kb on - strand, within Atu6108 at 129.792 kb on - strand, within Atu6108 at 129.954 kb on + strand at 130.075 kb on - strand at 130.099 kb on + strand at 130.107 kb on + strand at 130.146 kb on - strand at 130.189 kb on + strand at 130.197 kb on - strand at 130.206 kb on + strand at 130.229 kb on - strand at 130.267 kb on + strand at 130.296 kb on + strand at 130.338 kb on + strand at 130.338 kb on + strand at 130.340 kb on - strand at 130.341 kb on - strand at 130.350 kb on + strand at 130.498 kb on + strand at 130.503 kb on + strand at 130.552 kb on - strand, within Atu6109 at 130.701 kb on + strand, within Atu6109 at 130.742 kb on - strand, within Atu6109 at 130.746 kb on + strand, within Atu6109 at 130.751 kb on + strand, within Atu6109 at 130.759 kb on - strand, within Atu6109 at 130.768 kb on + strand, within Atu6109 at 130.790 kb on + strand, within Atu6109 at 130.852 kb on - strand, within Atu6109 at 130.898 kb on - strand, within Atu6109
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 5 mM remove 128,669 - Atu6105 0.51 +0.9 128,669 - Atu6105 0.51 +0.8 128,700 - Atu6105 0.54 -1.2 128,723 + Atu6105 0.57 -0.1 128,731 - Atu6105 0.58 -0.7 128,731 - Atu6105 0.58 +0.4 128,731 - Atu6105 0.58 +0.6 128,749 - Atu6105 0.60 +1.3 128,751 + Atu6105 0.60 +0.8 128,759 - Atu6105 0.61 +0.5 128,768 + Atu6105 0.62 -0.5 128,770 + Atu6105 0.62 +0.7 128,836 + Atu6105 0.70 -1.0 128,906 - Atu6105 0.77 +0.7 128,924 + Atu6105 0.80 -0.4 129,052 + +4.0 129,065 + +0.6 129,065 + -0.1 129,071 + +0.7 129,088 - +0.7 129,221 - Atu6106 0.39 -0.9 129,273 + Atu6106 0.55 +0.6 129,274 - Atu6106 0.56 +0.7 129,307 - Atu6106 0.66 +1.3 129,338 + Atu6106 0.76 -0.4 129,404 + -0.4 129,415 + Atu6107 0.15 +0.2 129,464 - Atu6107 0.36 -0.1 129,492 + Atu6107 0.49 -2.1 129,500 - Atu6107 0.52 +0.7 129,510 - Atu6107 0.57 +1.6 129,614 + +0.1 129,619 + -0.9 129,619 + -0.2 129,619 + +0.2 129,619 + -2.0 129,619 + +0.1 129,619 + +0.6 129,619 + +1.7 129,627 - +1.7 129,627 - -0.9 129,627 - +2.1 129,663 - Atu6108 0.12 +0.1 129,702 - Atu6108 0.25 -0.1 129,729 + Atu6108 0.34 +0.4 129,747 - Atu6108 0.40 +0.2 129,747 - Atu6108 0.40 -0.0 129,747 - Atu6108 0.40 +1.6 129,747 - Atu6108 0.40 +1.1 129,792 - Atu6108 0.54 +1.2 129,954 + -1.0 130,075 - -1.1 130,099 + -0.5 130,107 + -0.0 130,146 - -0.1 130,189 + +1.2 130,197 - -0.3 130,206 + -0.5 130,229 - +0.3 130,267 + +0.6 130,296 + -0.2 130,338 + +0.6 130,338 + -0.3 130,340 - +0.1 130,341 - -0.8 130,350 + +0.0 130,498 + -0.1 130,503 + +0.1 130,552 - Atu6109 0.17 +0.3 130,701 + Atu6109 0.42 +0.4 130,742 - Atu6109 0.49 +0.1 130,746 + Atu6109 0.49 -0.2 130,751 + Atu6109 0.50 +0.6 130,759 - Atu6109 0.52 +0.3 130,768 + Atu6109 0.53 -1.3 130,790 + Atu6109 0.57 +0.6 130,852 - Atu6109 0.67 +0.4 130,898 - Atu6109 0.75 -0.3
Or see this region's nucleotide sequence