Strain Fitness in Agrobacterium fabrum C58 around Atu5054

Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 5 mM
51,241	+				-0.1
51,244	-				+0.6
51,249	-				-0.4
51,249	-				+0.4
51,249	-				-0.4
51,285	-				-0.5
51,299	-				-0.2
51,301	+				+0.3
51,301	+				-1.0
51,301	+				+0.0
51,301	+				+0.2
51,309	-				-0.2
51,309	-				+0.3
51,309	-				-0.5
51,309	-				-0.4
51,320	+				+0.1
51,330	+				+1.1
51,335	+				+0.6
51,335	+				+2.1
51,335	+				+0.4
51,335	+				-1.6
51,335	+				-0.6
51,335	+				-0.2
51,335	+				+0.1
51,335	+				+0.1
51,338	-				+0.1
51,343	-				-1.2
51,343	-				+0.6
51,343	-				+0.2
51,343	-				-0.4
51,343	-				-1.9
51,390	-		Atu5052	0.17	-0.1
51,430	-		Atu5052	0.25	+0.8
51,430	-		Atu5052	0.25	+0.0
51,430	-		Atu5052	0.25	+0.3
51,430	-		Atu5052	0.25	+0.3
51,443	+		Atu5052	0.28	+1.2
51,550	-		Atu5052	0.50	+0.2
51,556	+		Atu5052	0.51	-0.5
51,594	+		Atu5052	0.59	-0.2
51,657	+		Atu5052	0.73	-0.4
51,657	-		Atu5052	0.73	+0.6
51,737	-		Atu5052	0.89	-0.2
51,753	+				+0.3
51,753	+				+0.5
51,753	+				+1.1
51,753	+				+0.1
51,758	+				+0.2
51,761	-				-0.9
51,761	-				-0.1
51,855	+				-1.3
51,858	-				+2.0
51,882	-				-0.3
52,142	+				+0.2
52,255	-		Atu5054	0.31	+0.3
52,278	+		Atu5054	0.39	-0.2
52,285	-		Atu5054	0.42	-0.5
52,318	+		Atu5054	0.54	-0.8
52,399	+		Atu5054	0.83	-1.6
52,399	+		Atu5054	0.83	-1.4
52,426	-				+0.6
52,437	-				-0.2
52,437	-				-0.3
52,461	-				-0.5
52,505	+				+0.1
52,531	-				+0.4
52,558	+				+0.5
52,611	+				-0.4
52,619	-				+0.2
52,638	-				+1.0
52,679	-				+0.1
52,732	+		Atu5055	0.10	-0.1
52,782	-		Atu5055	0.12	-1.0
52,805	+		Atu5055	0.13	-0.5
52,812	+		Atu5055	0.13	-0.3
52,854	+		Atu5055	0.15	+0.2
52,932	+		Atu5055	0.18	+0.1
52,951	-		Atu5055	0.19	+0.3
52,955	+		Atu5055	0.19	+0.3
52,963	-		Atu5055	0.19	+0.1
52,987	+		Atu5055	0.20	+2.4
53,041	-		Atu5055	0.22	+1.0
53,059	+		Atu5055	0.23	+0.7
53,059	+		Atu5055	0.23	-0.6
53,133	-		Atu5055	0.25	-1.4
53,134	-		Atu5055	0.26	+0.1
53,134	-		Atu5055	0.26	+0.3
53,145	+		Atu5055	0.26	+0.6
53,145	+		Atu5055	0.26	-0.1
53,231	+		Atu5055	0.29	-0.1
53,239	-		Atu5055	0.29	+1.3
53,250	+		Atu5055	0.30	-0.3
53,258	-		Atu5055	0.30	+0.8
53,265	+		Atu5055	0.30	+1.3
53,265	+		Atu5055	0.30	-0.3
53,273	-		Atu5055	0.31	-0.3
53,293	+		Atu5055	0.32	+0.3
53,363	+		Atu5055	0.34	-0.0
53,370	-		Atu5055	0.34	-0.4
53,403	+		Atu5055	0.36	+0.1
53,411	-		Atu5055	0.36	+1.1
53,432	-		Atu5055	0.37	-0.6