Strain Fitness in Agrobacterium fabrum C58 around Atu2417

Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 5 mM
2,386,688	-		Atu2416	0.20	+0.9
2,386,688	-		Atu2416	0.20	+0.5
2,386,693	-		Atu2416	0.20	+0.0
2,386,754	-		Atu2416	0.26	-0.1
2,386,861	+		Atu2416	0.36	+0.2
2,386,869	-		Atu2416	0.37	+0.7
2,386,869	-		Atu2416	0.37	-0.1
2,386,871	+		Atu2416	0.37	+0.9
2,386,885	+		Atu2416	0.39	+0.5
2,386,885	+		Atu2416	0.39	-0.5
2,387,016	-		Atu2416	0.51	+2.3
2,387,062	+		Atu2416	0.56	-0.2
2,387,062	+		Atu2416	0.56	-1.5
2,387,062	+		Atu2416	0.56	+0.4
2,387,062	+		Atu2416	0.56	+0.3
2,387,070	-		Atu2416	0.57	+0.5
2,387,070	-		Atu2416	0.57	-0.1
2,387,070	-		Atu2416	0.57	-0.0
2,387,070	-		Atu2416	0.57	+0.1
2,387,070	-		Atu2416	0.57	-1.2
2,387,070	-		Atu2416	0.57	-0.8
2,387,070	-		Atu2416	0.57	-0.1
2,387,081	-		Atu2416	0.58	-0.9
2,387,123	-		Atu2416	0.62	-0.4
2,387,140	+		Atu2416	0.63	+0.8
2,387,338	+		Atu2416	0.83	+0.9
2,387,354	+		Atu2416	0.84	-0.0
2,387,375	+		Atu2416	0.86	-0.1
2,387,440	+				+0.8
2,387,445	+				-0.6
2,387,468	-				-1.1
2,387,775	-		Atu2417	0.12	-2.7
2,387,845	+		Atu2417	0.21	-1.5
2,387,863	-		Atu2417	0.24	-1.8
2,387,864	+		Atu2417	0.24	-0.6
2,387,897	+		Atu2417	0.28	-0.4
2,388,035	+		Atu2417	0.46	-0.4
2,388,123	+		Atu2417	0.57	+0.9
2,388,162	-		Atu2417	0.62	+0.3
2,388,340	+		Atu2417	0.85	-0.3
2,388,576	-				+0.9
2,388,697	-				+0.0
2,388,718	-				+0.0
2,388,779	+				-0.1
2,388,864	+		Atu2418	0.11	-0.2
2,388,871	+		Atu2418	0.11	+0.2
2,388,904	+		Atu2418	0.12	-0.3
2,388,988	+		Atu2418	0.15	+0.4
2,389,044	+		Atu2418	0.16	-0.5
2,389,052	-		Atu2418	0.16	-0.1
2,389,260	+		Atu2418	0.23	+0.2
2,389,268	-		Atu2418	0.23	-1.8
2,389,334	-		Atu2418	0.25	-1.5
2,389,334	-		Atu2418	0.25	-0.2
2,389,405	-		Atu2418	0.27	-0.6