Strain Fitness in Agrobacterium fabrum C58 around Atu1597

Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1596 and Atu1597 are separated by 12 nucleotidesAtu1597 and Atu1599 are separated by 208 nucleotidesAtu1599 and Atu1600 are separated by 89 nucleotides Atu1596: Atu1596 - 3-oxoacyl-(acyl-carrier-protein) synthase II, at 1,578,309 to 1,579,589 Atu1596 Atu1597: Atu1597 - 3-oxoacyl-(acyl-carrier-protein) synthase II, at 1,579,602 to 1,580,798 Atu1597 Atu1599: Atu1599 - (3R)-Hydroxymyristoyl-(acyl carrier protein)- Dehydratase, at 1,581,007 to 1,581,486 Atu1599 Atu1600: Atu1600 - acyl carrier protein, at 1,581,576 to 1,581,860 Atu1600 Position (kb) 1579 1580 1581Strain fitness (log2 ratio) -1 0 1at 1580.912 kb on + strandat 1580.944 kb on + strandat 1580.985 kb on + strandat 1580.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 5 mM
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1,580,912 + -0.3
1,580,944 + -0.4
1,580,985 + +0.8
1,580,993 - +0.4

Or see this region's nucleotide sequence