Strain Fitness in Agrobacterium fabrum C58 around Atu1493

Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 5 mM
1,480,835	-		Atu1491	0.76	-1.6
1,480,949	-		Atu1491	0.87	-0.8
1,481,030	+				+0.3
1,481,043	+				+0.2
1,481,119	-				+1.0
1,481,217	-				+1.2
1,481,224	-				-0.0
1,481,225	+				-0.5
1,481,232	+				+0.1
1,481,271	-		Atu1492	0.15	+0.1
1,481,389	-		Atu1492	0.48	-0.0
1,481,398	-		Atu1492	0.51	-0.3
1,481,399	-		Atu1492	0.51	-0.6
1,481,463	-		Atu1492	0.69	+0.1
1,481,738	+				-0.5
1,481,765	+				+0.5
1,481,773	-				-1.2
1,481,893	+		Atu1493	0.10	-0.2
1,481,959	+		Atu1493	0.14	+0.8
1,481,989	-		Atu1493	0.16	+0.8
1,481,989	-		Atu1493	0.16	-0.4
1,482,229	+		Atu1493	0.29	+0.2
1,482,345	+		Atu1493	0.36	-0.8
1,482,387	+		Atu1493	0.38	+1.2
1,482,438	-		Atu1493	0.41	-0.1
1,482,524	+		Atu1493	0.46	-0.1
1,482,524	+		Atu1493	0.46	+1.0
1,482,524	+		Atu1493	0.46	+0.2
1,482,532	-		Atu1493	0.46	+0.7
1,482,532	-		Atu1493	0.46	-0.2
1,482,552	-		Atu1493	0.47	+0.2
1,482,610	-		Atu1493	0.51	-2.0
1,482,610	-		Atu1493	0.51	-0.4
1,482,615	-		Atu1493	0.51	+0.7
1,482,615	-		Atu1493	0.51	-1.5
1,482,764	+		Atu1493	0.59	+0.2
1,482,850	-		Atu1493	0.64	+0.2
1,482,912	-		Atu1493	0.68	+0.5
1,482,912	-		Atu1493	0.68	-0.3
1,483,327	+				+0.7
1,483,589	-				-0.2
1,483,648	-				-0.1
1,483,738	-		Atu1494	0.18	-0.4
1,483,811	-		Atu1494	0.27	-0.6
1,483,811	-		Atu1494	0.27	+0.5
1,483,986	+		Atu1494	0.48	+0.5
1,483,986	+		Atu1494	0.48	-0.2
1,483,987	-		Atu1494	0.48	-0.2
1,484,028	+		Atu1494	0.53	-1.1
1,484,094	-		Atu1494	0.61	-0.3
1,484,153	+		Atu1494	0.68	-1.5
1,484,175	-		Atu1494	0.71	-0.5
1,484,185	-		Atu1494	0.72	+1.1
1,484,194	-		Atu1494	0.73	-0.7
1,484,277	+		Atu1494	0.84	-1.2
1,484,287	-		Atu1494	0.85	-0.6
1,484,342	+				+0.4
1,484,385	-				+0.3
1,484,385	-				+0.2
1,484,414	+				+0.7
1,484,422	-				+0.2
1,484,422	-				+0.9
1,484,422	-				+0.3
1,484,428	-				-2.2