Strain Fitness in Agrobacterium fabrum C58 around Atu1200

Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 5 mM
1,191,571	-				+0.1
1,191,591	-				-0.3
1,191,676	-		Atu1199	0.17	+0.6
1,191,757	+		Atu1199	0.26	+0.4
1,191,763	+		Atu1199	0.27	+0.0
1,191,763	+		Atu1199	0.27	+0.2
1,191,768	+		Atu1199	0.27	+0.3
1,191,771	-		Atu1199	0.28	-0.2
1,191,791	+		Atu1199	0.30	-0.6
1,191,854	-		Atu1199	0.37	+1.3
1,191,866	+		Atu1199	0.38	+0.1
1,191,943	+		Atu1199	0.47	-0.1
1,191,944	-		Atu1199	0.47	-0.5
1,191,951	-		Atu1199	0.47	+0.1
1,192,115	+		Atu1199	0.66	+0.8
1,192,115	+		Atu1199	0.66	-0.4
1,192,123	-		Atu1199	0.66	+0.6
1,192,211	+		Atu1199	0.76	-0.3
1,192,247	-		Atu1199	0.80	+0.1
1,192,300	+		Atu1199	0.86	-0.2
1,192,300	+		Atu1199	0.86	-2.1
1,192,300	+		Atu1199	0.86	-0.2
1,192,300	+		Atu1199	0.86	-0.5
1,192,308	-		Atu1199	0.87	+0.1
1,192,308	-		Atu1199	0.87	+0.6
1,192,308	-		Atu1199	0.87	+1.8
1,192,308	-		Atu1199	0.87	+0.4
1,192,308	-		Atu1199	0.87	-0.0
1,192,359	-				+0.2
1,192,383	+				+0.6
1,192,391	-				-0.3
1,192,725	-		Atu1200	0.15	+0.5
1,192,846	+		Atu1200	0.26	+0.5
1,192,877	+		Atu1200	0.29	+0.1
1,192,905	+		Atu1200	0.32	+0.7
1,192,916	+		Atu1200	0.33	+1.2
1,192,959	+		Atu1200	0.37	-2.5
1,193,006	-		Atu1200	0.41	+0.1
1,193,066	+		Atu1200	0.47	+0.2
1,193,191	-		Atu1200	0.59	+1.0
1,193,317	-		Atu1200	0.71	+1.1
1,193,355	+		Atu1200	0.74	+0.5
1,193,356	+		Atu1200	0.74	+1.1
1,193,360	+		Atu1200	0.75	-0.5
1,193,363	-		Atu1200	0.75	+0.3
1,193,363	-		Atu1200	0.75	+0.5
1,193,363	-		Atu1200	0.75	+0.3
1,193,363	-		Atu1200	0.75	+0.8
1,193,381	+		Atu1200	0.76	+0.1
1,193,402	+		Atu1200	0.78	+0.9
1,193,410	-		Atu1200	0.79	+0.6
1,193,412	+		Atu1200	0.79	+3.1
1,193,457	-		Atu1200	0.84	+0.2
1,193,457	-		Atu1200	0.84	+0.1
1,193,481	-		Atu1200	0.86	-0.2
1,193,579	-				+0.5
1,193,579	-				+0.8
1,193,579	-				+0.2
1,193,656	+				+0.1
1,193,664	+				-0.0
1,193,813	-		Atu1201	0.17	+0.8
1,193,899	-		Atu1201	0.26	+0.1
1,194,012	+		Atu1201	0.37	+0.3
1,194,012	+		Atu1201	0.37	+0.9
1,194,072	+		Atu1201	0.43	-0.7
1,194,115	-		Atu1201	0.47	+0.6
1,194,140	+		Atu1201	0.49	-0.1
1,194,228	+		Atu1201	0.58	-0.3
1,194,364	+		Atu1201	0.71	-0.2
1,194,365	-		Atu1201	0.71	+0.1
1,194,399	+		Atu1201	0.75	+0.3
1,194,422	+		Atu1201	0.77	-0.0
1,194,422	+		Atu1201	0.77	-0.2
1,194,424	+		Atu1201	0.77	-0.1
1,194,430	-		Atu1201	0.78	+0.0
1,194,430	-		Atu1201	0.78	+0.6
1,194,430	-		Atu1201	0.78	-0.2
1,194,469	+		Atu1201	0.82	-0.0
1,194,523	-		Atu1201	0.87	-0.7