Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0669 and Atu0670 are separated by 238 nucleotides Atu0670 and Atu8085 overlap by 4 nucleotides Atu8085 and Atu0671 are separated by 25 nucleotides
Atu0669: Atu0669 - hypothetical protein, at 665,308 to 666,084
Atu0669
Atu0670: Atu0670 - 3-methyladenine-DNA glycosylase, at 666,323 to 666,952
Atu0670
Atu8085: Atu8085 - hypothetical protein, at 666,949 to 667,392
Atu8085
Atu0671: Atu0671 - hypothetical protein, at 667,418 to 668,335
Atu0671
Position (kb) 666
667 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 665.324 kb on - strand at 665.416 kb on + strand, within Atu0669 at 665.416 kb on + strand, within Atu0669 at 665.416 kb on + strand, within Atu0669 at 665.429 kb on - strand, within Atu0669 at 665.429 kb on - strand, within Atu0669 at 665.448 kb on - strand, within Atu0669 at 665.482 kb on - strand, within Atu0669 at 665.507 kb on + strand, within Atu0669 at 665.540 kb on - strand, within Atu0669 at 665.560 kb on + strand, within Atu0669 at 665.568 kb on - strand, within Atu0669 at 665.600 kb on + strand, within Atu0669 at 665.600 kb on - strand, within Atu0669 at 665.608 kb on - strand, within Atu0669 at 665.644 kb on + strand, within Atu0669 at 665.901 kb on - strand, within Atu0669 at 666.254 kb on + strand at 666.278 kb on + strand at 666.278 kb on + strand at 666.303 kb on + strand at 666.309 kb on - strand at 666.377 kb on - strand at 666.415 kb on + strand, within Atu0670 at 666.423 kb on - strand, within Atu0670 at 666.429 kb on - strand, within Atu0670 at 666.460 kb on + strand, within Atu0670 at 666.506 kb on - strand, within Atu0670 at 666.506 kb on - strand, within Atu0670 at 666.511 kb on - strand, within Atu0670 at 666.577 kb on + strand, within Atu0670 at 666.579 kb on + strand, within Atu0670 at 666.703 kb on + strand, within Atu0670 at 666.752 kb on - strand, within Atu0670 at 666.752 kb on - strand, within Atu0670 at 666.765 kb on + strand, within Atu0670 at 666.865 kb on + strand, within Atu0670 at 666.865 kb on + strand, within Atu0670 at 666.873 kb on - strand, within Atu0670 at 666.876 kb on - strand, within Atu0670 at 667.063 kb on - strand, within Atu8085 at 667.063 kb on - strand, within Atu8085 at 667.149 kb on + strand, within Atu8085 at 667.156 kb on - strand, within Atu8085 at 667.181 kb on - strand, within Atu8085 at 667.221 kb on - strand, within Atu8085 at 667.266 kb on + strand, within Atu8085 at 667.266 kb on + strand, within Atu8085 at 667.282 kb on - strand, within Atu8085 at 667.321 kb on + strand, within Atu8085 at 667.385 kb on - strand at 667.387 kb on + strand at 667.406 kb on + strand at 667.414 kb on - strand at 667.416 kb on + strand at 667.416 kb on + strand at 667.434 kb on + strand at 667.578 kb on - strand, within Atu0671 at 667.789 kb on - strand, within Atu0671 at 667.797 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 5 mM remove 665,324 - +0.2 665,416 + Atu0669 0.14 +0.2 665,416 + Atu0669 0.14 +0.4 665,416 + Atu0669 0.14 -0.2 665,429 - Atu0669 0.16 +0.4 665,429 - Atu0669 0.16 +0.8 665,448 - Atu0669 0.18 -0.2 665,482 - Atu0669 0.22 -0.6 665,507 + Atu0669 0.26 -0.0 665,540 - Atu0669 0.30 +0.2 665,560 + Atu0669 0.32 +1.1 665,568 - Atu0669 0.33 -0.4 665,600 + Atu0669 0.38 +0.1 665,600 - Atu0669 0.38 +0.3 665,608 - Atu0669 0.39 -0.9 665,644 + Atu0669 0.43 -0.2 665,901 - Atu0669 0.76 -1.9 666,254 + +0.0 666,278 + -0.1 666,278 + +0.5 666,303 + +0.4 666,309 - +0.1 666,377 - +1.4 666,415 + Atu0670 0.15 +0.9 666,423 - Atu0670 0.16 -0.5 666,429 - Atu0670 0.17 +0.2 666,460 + Atu0670 0.22 +0.5 666,506 - Atu0670 0.29 +0.5 666,506 - Atu0670 0.29 -0.8 666,511 - Atu0670 0.30 -0.2 666,577 + Atu0670 0.40 +1.2 666,579 + Atu0670 0.41 +1.5 666,703 + Atu0670 0.60 -0.1 666,752 - Atu0670 0.68 +2.8 666,752 - Atu0670 0.68 +0.0 666,765 + Atu0670 0.70 -0.1 666,865 + Atu0670 0.86 +0.6 666,865 + Atu0670 0.86 +0.0 666,873 - Atu0670 0.87 +0.1 666,876 - Atu0670 0.88 +0.1 667,063 - Atu8085 0.26 +0.1 667,063 - Atu8085 0.26 -0.3 667,149 + Atu8085 0.45 +1.5 667,156 - Atu8085 0.47 +0.9 667,181 - Atu8085 0.52 +0.2 667,221 - Atu8085 0.61 +0.2 667,266 + Atu8085 0.71 +1.1 667,266 + Atu8085 0.71 +0.7 667,282 - Atu8085 0.75 +0.1 667,321 + Atu8085 0.84 +0.3 667,385 - +0.4 667,387 + -0.1 667,406 + -0.5 667,414 - +0.3 667,416 + +0.1 667,416 + +1.1 667,434 + -0.2 667,578 - Atu0671 0.17 +0.5 667,789 - Atu0671 0.40 +0.0 667,797 + Atu0671 0.41 +2.5 667,876 + Atu0671 0.50 +0.1 667,876 + Atu0671 0.50 -0.1 667,876 + Atu0671 0.50 -0.2
Or see this region's nucleotide sequence