Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0286 and Atu0287 overlap by 1 nucleotides Atu0287 and Atu0288 are separated by 41 nucleotides
Atu0286: Atu0286 - hypothetical protein, at 279,498 to 280,619
Atu0286
Atu0287: Atu0287 - hypothetical protein, at 280,619 to 282,160
Atu0287
Atu0288: Atu0288 - hypothetical protein, at 282,202 to 283,479
Atu0288
Position (kb) 280
281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 279.630 kb on - strand, within Atu0286 at 279.647 kb on - strand, within Atu0286 at 279.728 kb on + strand, within Atu0286 at 279.753 kb on + strand, within Atu0286 at 279.761 kb on - strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.801 kb on + strand, within Atu0286 at 279.821 kb on + strand, within Atu0286 at 279.857 kb on - strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.911 kb on - strand, within Atu0286 at 279.921 kb on - strand, within Atu0286 at 280.004 kb on - strand, within Atu0286 at 280.142 kb on + strand, within Atu0286 at 280.142 kb on + strand, within Atu0286 at 280.208 kb on + strand, within Atu0286 at 280.230 kb on - strand, within Atu0286 at 280.258 kb on + strand, within Atu0286 at 280.258 kb on + strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.415 kb on + strand, within Atu0286 at 280.421 kb on - strand, within Atu0286 at 280.453 kb on - strand, within Atu0286 at 280.461 kb on + strand, within Atu0286 at 280.500 kb on - strand, within Atu0286 at 280.502 kb on + strand, within Atu0286 at 280.507 kb on + strand at 280.510 kb on - strand at 280.510 kb on - strand at 280.515 kb on - strand at 280.538 kb on - strand at 280.681 kb on - strand at 280.734 kb on - strand at 280.734 kb on - strand at 280.764 kb on - strand at 280.777 kb on - strand, within Atu0287 at 280.815 kb on + strand, within Atu0287 at 280.815 kb on + strand, within Atu0287 at 280.875 kb on - strand, within Atu0287 at 280.896 kb on - strand, within Atu0287 at 281.006 kb on + strand, within Atu0287 at 281.147 kb on + strand, within Atu0287 at 281.147 kb on - strand, within Atu0287 at 281.245 kb on + strand, within Atu0287 at 281.305 kb on + strand, within Atu0287 at 281.305 kb on - strand, within Atu0287 at 281.364 kb on - strand, within Atu0287 at 281.385 kb on + strand, within Atu0287 at 281.407 kb on + strand, within Atu0287 at 281.407 kb on + strand, within Atu0287 at 281.409 kb on - strand, within Atu0287 at 281.446 kb on + strand, within Atu0287 at 281.487 kb on + strand, within Atu0287 at 281.492 kb on - strand, within Atu0287 at 281.496 kb on - strand, within Atu0287 at 281.501 kb on - strand, within Atu0287 at 281.702 kb on - strand, within Atu0287 at 281.746 kb on - strand, within Atu0287 at 281.820 kb on - strand, within Atu0287 at 281.829 kb on - strand, within Atu0287 at 281.945 kb on - strand, within Atu0287 at 282.033 kb on + strand at 282.037 kb on - strand at 282.079 kb on + strand at 282.223 kb on - strand at 282.293 kb on + strand at 282.293 kb on + strand at 282.363 kb on - strand, within Atu0288 at 282.436 kb on - strand, within Atu0288 at 282.464 kb on + strand, within Atu0288 at 282.465 kb on - strand, within Atu0288 at 282.583 kb on - strand, within Atu0288 at 282.628 kb on + strand, within Atu0288 at 282.640 kb on + strand, within Atu0288 at 282.646 kb on - strand, within Atu0288 at 282.669 kb on + strand, within Atu0288 at 282.671 kb on + strand, within Atu0288 at 282.671 kb on + strand, within Atu0288 at 282.671 kb on + strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.702 kb on - strand, within Atu0288 at 282.727 kb on + strand, within Atu0288 at 282.746 kb on + strand, within Atu0288 at 282.754 kb on - strand, within Atu0288 at 282.773 kb on + strand, within Atu0288 at 282.774 kb on - strand, within Atu0288 at 282.774 kb on - strand, within Atu0288 at 282.781 kb on - strand, within Atu0288 at 282.796 kb on - strand, within Atu0288 at 282.875 kb on + strand, within Atu0288 at 282.883 kb on - strand, within Atu0288 at 282.883 kb on - strand, within Atu0288 at 282.900 kb on + strand, within Atu0288 at 282.908 kb on - strand, within Atu0288 at 282.910 kb on + strand, within Atu0288 at 282.910 kb on + strand, within Atu0288 at 282.918 kb on - strand, within Atu0288 at 282.961 kb on - strand, within Atu0288 at 282.967 kb on + strand, within Atu0288 at 283.003 kb on - strand, within Atu0288 at 283.003 kb on - strand, within Atu0288 at 283.013 kb on - strand, within Atu0288 at 283.013 kb on - strand, within Atu0288 at 283.117 kb on + strand, within Atu0288 at 283.132 kb on + strand, within Atu0288 at 283.137 kb on + strand, within Atu0288
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 5 mM remove 279,630 - Atu0286 0.12 -3.0 279,647 - Atu0286 0.13 -0.1 279,728 + Atu0286 0.20 -0.8 279,753 + Atu0286 0.23 +0.1 279,761 - Atu0286 0.23 -1.0 279,772 + Atu0286 0.24 -1.2 279,772 + Atu0286 0.24 -1.6 279,772 + Atu0286 0.24 -1.2 279,772 + Atu0286 0.24 -2.0 279,772 + Atu0286 0.24 -1.0 279,772 + Atu0286 0.24 -1.3 279,780 - Atu0286 0.25 -0.1 279,780 - Atu0286 0.25 -0.7 279,780 - Atu0286 0.25 -1.2 279,801 + Atu0286 0.27 +1.6 279,821 + Atu0286 0.29 -1.1 279,857 - Atu0286 0.32 -0.6 279,893 + Atu0286 0.35 -1.5 279,893 + Atu0286 0.35 -0.4 279,893 + Atu0286 0.35 -0.9 279,893 + Atu0286 0.35 +0.7 279,893 + Atu0286 0.35 -0.4 279,893 + Atu0286 0.35 -1.0 279,893 + Atu0286 0.35 -0.6 279,901 - Atu0286 0.36 -1.7 279,901 - Atu0286 0.36 -0.1 279,901 - Atu0286 0.36 -2.0 279,911 - Atu0286 0.37 -0.7 279,921 - Atu0286 0.38 -0.3 280,004 - Atu0286 0.45 -0.3 280,142 + Atu0286 0.57 -0.1 280,142 + Atu0286 0.57 -0.4 280,208 + Atu0286 0.63 -0.6 280,230 - Atu0286 0.65 -0.8 280,258 + Atu0286 0.68 -1.3 280,258 + Atu0286 0.68 +0.6 280,266 - Atu0286 0.68 -0.4 280,266 - Atu0286 0.68 -0.9 280,266 - Atu0286 0.68 -1.0 280,332 + Atu0286 0.74 -1.2 280,332 + Atu0286 0.74 +0.4 280,332 + Atu0286 0.74 -1.5 280,332 + Atu0286 0.74 -1.2 280,332 + Atu0286 0.74 -1.2 280,332 + Atu0286 0.74 +0.8 280,340 - Atu0286 0.75 -1.4 280,340 - Atu0286 0.75 -1.3 280,340 - Atu0286 0.75 -1.2 280,415 + Atu0286 0.82 -1.4 280,421 - Atu0286 0.82 -1.0 280,453 - Atu0286 0.85 -2.0 280,461 + Atu0286 0.86 -0.7 280,500 - Atu0286 0.89 -0.8 280,502 + Atu0286 0.89 -0.9 280,507 + -0.6 280,510 - -0.6 280,510 - -1.6 280,515 - -1.0 280,538 - -0.9 280,681 - -1.0 280,734 - -2.2 280,734 - -0.8 280,764 - -1.4 280,777 - Atu0287 0.10 -0.1 280,815 + Atu0287 0.13 -0.9 280,815 + Atu0287 0.13 -1.6 280,875 - Atu0287 0.17 -0.6 280,896 - Atu0287 0.18 -1.6 281,006 + Atu0287 0.25 -1.4 281,147 + Atu0287 0.34 -0.5 281,147 - Atu0287 0.34 -1.1 281,245 + Atu0287 0.41 -0.6 281,305 + Atu0287 0.44 -0.6 281,305 - Atu0287 0.44 -0.7 281,364 - Atu0287 0.48 -1.3 281,385 + Atu0287 0.50 -1.5 281,407 + Atu0287 0.51 -0.7 281,407 + Atu0287 0.51 -2.2 281,409 - Atu0287 0.51 +0.1 281,446 + Atu0287 0.54 -1.4 281,487 + Atu0287 0.56 -0.8 281,492 - Atu0287 0.57 -1.5 281,496 - Atu0287 0.57 -1.4 281,501 - Atu0287 0.57 -0.3 281,702 - Atu0287 0.70 -1.9 281,746 - Atu0287 0.73 -0.8 281,820 - Atu0287 0.78 -1.9 281,829 - Atu0287 0.78 -0.8 281,945 - Atu0287 0.86 +0.2 282,033 + -1.7 282,037 - -0.2 282,079 + -0.6 282,223 - -0.4 282,293 + -0.2 282,293 + -0.1 282,363 - Atu0288 0.13 -0.9 282,436 - Atu0288 0.18 -0.9 282,464 + Atu0288 0.21 -1.4 282,465 - Atu0288 0.21 -1.0 282,583 - Atu0288 0.30 -0.9 282,628 + Atu0288 0.33 +0.1 282,640 + Atu0288 0.34 -2.3 282,646 - Atu0288 0.35 -0.3 282,669 + Atu0288 0.37 -1.7 282,671 + Atu0288 0.37 +0.6 282,671 + Atu0288 0.37 -1.3 282,671 + Atu0288 0.37 -1.4 282,679 - Atu0288 0.37 -0.8 282,679 - Atu0288 0.37 -1.3 282,679 - Atu0288 0.37 +0.4 282,679 - Atu0288 0.37 -0.3 282,702 - Atu0288 0.39 -1.8 282,727 + Atu0288 0.41 -1.8 282,746 + Atu0288 0.43 -0.5 282,754 - Atu0288 0.43 -1.7 282,773 + Atu0288 0.45 -1.2 282,774 - Atu0288 0.45 -0.0 282,774 - Atu0288 0.45 -0.2 282,781 - Atu0288 0.45 -1.6 282,796 - Atu0288 0.46 -1.0 282,875 + Atu0288 0.53 -1.3 282,883 - Atu0288 0.53 -0.0 282,883 - Atu0288 0.53 -0.9 282,900 + Atu0288 0.55 -3.2 282,908 - Atu0288 0.55 -1.0 282,910 + Atu0288 0.55 -2.6 282,910 + Atu0288 0.55 -2.4 282,918 - Atu0288 0.56 -1.1 282,961 - Atu0288 0.59 -3.6 282,967 + Atu0288 0.60 -1.9 283,003 - Atu0288 0.63 -1.4 283,003 - Atu0288 0.63 -2.1 283,013 - Atu0288 0.63 -1.9 283,013 - Atu0288 0.63 -1.3 283,117 + Atu0288 0.72 -1.0 283,132 + Atu0288 0.73 -1.3 283,137 + Atu0288 0.73 -2.3
Or see this region's nucleotide sequence