Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0261 and Atu0262 are separated by 0 nucleotides Atu0262 and Atu0263 are separated by 1 nucleotides Atu0263 and Atu0264 are separated by 108 nucleotides
Atu0261: Atu0261 - transcriptional regulator, LysR family, at 259,145 to 260,035
Atu0261
Atu0262: Atu0262 - acetyltransferase, at 260,036 to 260,479
Atu0262
Atu0263: Atu0263 - oxidoreductase, at 260,481 to 261,431
Atu0263
Atu0264: Atu0264 - transcriptional regulator, AraC family, at 261,540 to 262,523
Atu0264
Position (kb) 260
261
262 Strain fitness (log2 ratio) -1
0
1 at 259.492 kb on + strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.828 kb on - strand, within Atu0261 at 259.835 kb on - strand, within Atu0261 at 259.862 kb on - strand, within Atu0261 at 259.889 kb on + strand, within Atu0261 at 259.933 kb on - strand, within Atu0261 at 259.991 kb on - strand at 259.997 kb on - strand at 260.135 kb on - strand, within Atu0262 at 260.142 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.250 kb on + strand, within Atu0262 at 260.258 kb on - strand, within Atu0262 at 260.494 kb on - strand at 260.494 kb on - strand at 260.496 kb on + strand at 260.505 kb on + strand at 260.533 kb on - strand at 260.614 kb on + strand, within Atu0263 at 260.614 kb on + strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.649 kb on + strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.870 kb on + strand, within Atu0263 at 260.878 kb on - strand, within Atu0263 at 260.891 kb on - strand, within Atu0263 at 261.279 kb on - strand, within Atu0263 at 261.332 kb on - strand, within Atu0263 at 261.355 kb on + strand at 261.418 kb on - strand at 261.489 kb on + strand at 261.704 kb on - strand, within Atu0264 at 261.770 kb on + strand, within Atu0264 at 261.799 kb on + strand, within Atu0264 at 261.804 kb on + strand, within Atu0264 at 261.831 kb on + strand, within Atu0264 at 261.916 kb on + strand, within Atu0264 at 261.961 kb on + strand, within Atu0264 at 262.064 kb on + strand, within Atu0264 at 262.064 kb on + strand, within Atu0264 at 262.107 kb on + strand, within Atu0264 at 262.112 kb on + strand, within Atu0264 at 262.117 kb on + strand, within Atu0264 at 262.117 kb on + strand, within Atu0264 at 262.125 kb on - strand, within Atu0264 at 262.158 kb on - strand, within Atu0264 at 262.209 kb on + strand, within Atu0264 at 262.230 kb on - strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.348 kb on - strand, within Atu0264 at 262.348 kb on - strand, within Atu0264 at 262.359 kb on + strand, within Atu0264
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 5 mM remove 259,492 + Atu0261 0.39 +0.1 259,750 - Atu0261 0.68 +0.5 259,750 - Atu0261 0.68 -0.1 259,828 - Atu0261 0.77 +0.3 259,835 - Atu0261 0.77 +0.5 259,862 - Atu0261 0.80 -0.7 259,889 + Atu0261 0.84 +0.3 259,933 - Atu0261 0.88 +0.4 259,991 - +0.4 259,997 - +0.2 260,135 - Atu0262 0.22 +0.3 260,142 - Atu0262 0.24 +0.0 260,152 - Atu0262 0.26 -0.9 260,152 - Atu0262 0.26 -0.0 260,152 - Atu0262 0.26 -0.2 260,250 + Atu0262 0.48 -1.0 260,258 - Atu0262 0.50 +0.3 260,494 - +0.4 260,494 - -0.7 260,496 + +0.0 260,505 + +0.6 260,533 - +0.1 260,614 + Atu0263 0.14 -0.2 260,614 + Atu0263 0.14 +0.4 260,622 - Atu0263 0.15 +0.5 260,622 - Atu0263 0.15 +0.1 260,644 + Atu0263 0.17 +0.4 260,644 + Atu0263 0.17 -0.4 260,649 + Atu0263 0.18 -0.0 260,657 - Atu0263 0.19 -0.3 260,657 - Atu0263 0.19 +0.0 260,870 + Atu0263 0.41 -0.3 260,878 - Atu0263 0.42 +0.6 260,891 - Atu0263 0.43 +0.2 261,279 - Atu0263 0.84 -0.0 261,332 - Atu0263 0.89 +0.2 261,355 + +0.2 261,418 - +0.4 261,489 + +0.9 261,704 - Atu0264 0.17 -0.3 261,770 + Atu0264 0.23 -0.4 261,799 + Atu0264 0.26 +0.5 261,804 + Atu0264 0.27 +0.0 261,831 + Atu0264 0.30 +0.5 261,916 + Atu0264 0.38 -0.1 261,961 + Atu0264 0.43 -0.3 262,064 + Atu0264 0.53 +1.1 262,064 + Atu0264 0.53 +0.2 262,107 + Atu0264 0.58 -0.2 262,112 + Atu0264 0.58 +0.1 262,117 + Atu0264 0.59 -0.8 262,117 + Atu0264 0.59 +0.3 262,125 - Atu0264 0.59 -0.3 262,158 - Atu0264 0.63 -1.2 262,209 + Atu0264 0.68 +0.1 262,230 - Atu0264 0.70 +1.1 262,340 + Atu0264 0.81 -0.4 262,340 + Atu0264 0.81 +0.4 262,340 + Atu0264 0.81 -0.3 262,340 + Atu0264 0.81 -0.1 262,348 - Atu0264 0.82 -0.4 262,348 - Atu0264 0.82 -0.1 262,359 + Atu0264 0.83 +0.0
Or see this region's nucleotide sequence