Strain Fitness in Escherichia coli BW25113 around b4136

Experiment: limonene 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	limonene 5 vol%
4,360,380	-				+0.3
4,360,410	-				+1.3
4,360,415	-				+1.9
4,360,471	+				+0.8
4,360,486	+				-0.2
4,360,557	-				+1.7
4,360,557	-				+2.9
4,360,557	-				+2.6
4,360,557	-				+2.6
4,360,716	+				-0.4
4,360,805	-				+0.4
4,360,833	-	yjdC	b4135	0.13	-0.2
4,360,860	+	yjdC	b4135	0.18	+0.2
4,360,891	-	yjdC	b4135	0.23	-0.7
4,360,901	+	yjdC	b4135	0.25	-0.7
4,360,930	+	yjdC	b4135	0.30	+0.4
4,360,930	+	yjdC	b4135	0.30	-0.0
4,360,938	+	yjdC	b4135	0.32	-0.5
4,361,011	-	yjdC	b4135	0.44	+1.2
4,361,031	+	yjdC	b4135	0.48	-0.2
4,361,133	+	yjdC	b4135	0.65	-0.7
4,361,140	+	yjdC	b4135	0.67	+0.9
4,361,195	-	yjdC	b4135	0.76	-1.1
4,361,249	-	yjdC	b4135	0.86	-0.2
4,361,383	-				+0.2
4,361,383	-				+0.5
4,361,427	-				-0.0
4,361,443	+				-0.8
4,361,452	-				+0.1
4,361,500	+				+0.1
4,361,506	-				-1.0
4,361,531	+				-0.1
4,361,531	+				+0.7
4,361,537	+				-0.7
4,361,542	+	dipZ	b4136	0.10	-0.8
4,361,542	+	dipZ	b4136	0.10	-0.7
4,361,720	-	dipZ	b4136	0.21	+0.4
4,361,720	-	dipZ	b4136	0.21	-0.4
4,361,729	+	dipZ	b4136	0.21	-2.7
4,361,752	-	dipZ	b4136	0.23	+0.8
4,361,784	+				+1.2
4,361,784	+				+1.2
4,361,793	+	dipZ	b4136	0.25	+0.4
4,361,854	+	dipZ	b4136	0.29	+0.6
4,361,857	+	dipZ	b4136	0.29	-0.2
4,361,953	+	dipZ	b4136	0.34	+0.5
4,362,119	+	dipZ	b4136	0.44	+0.0
4,362,127	-	dipZ	b4136	0.45	+0.5
4,362,142	-	dipZ	b4136	0.46	+0.2
4,362,156	+	dipZ	b4136	0.46	+0.0
4,362,157	-	dipZ	b4136	0.46	-0.6
4,362,160	-	dipZ	b4136	0.47	+0.1
4,362,160	-	dipZ	b4136	0.47	+0.2
4,362,177	+	dipZ	b4136	0.48	+0.7
4,362,229	+	dipZ	b4136	0.51	+0.1
4,362,288	+	dipZ	b4136	0.54	+0.2
4,362,288	+	dipZ	b4136	0.54	+0.8
4,362,343	+	dipZ	b4136	0.57	+0.1
4,362,344	-	dipZ	b4136	0.57	+0.1
4,362,399	-	dipZ	b4136	0.61	-0.8
4,362,409	-	dipZ	b4136	0.61	-0.2
4,362,409	-	dipZ	b4136	0.61	+0.5
4,362,478	+	dipZ	b4136	0.65	-0.7
4,362,478	+	dipZ	b4136	0.65	+0.0
4,362,479	-	dipZ	b4136	0.65	-0.5
4,362,479	-	dipZ	b4136	0.65	+0.0
4,362,486	-	dipZ	b4136	0.66	-0.5
4,362,521	+	dipZ	b4136	0.68	+0.4
4,362,521	+	dipZ	b4136	0.68	-1.5
4,362,545	-	dipZ	b4136	0.69	-0.3
4,362,545	-	dipZ	b4136	0.69	-0.7
4,362,611	+	dipZ	b4136	0.73	+1.0
4,362,611	+	dipZ	b4136	0.73	+0.2
4,362,686	-	dipZ	b4136	0.78	+3.2
4,362,686	-	dipZ	b4136	0.78	-0.8
4,362,698	+	dipZ	b4136	0.78	-0.4
4,362,698	+	dipZ	b4136	0.78	-0.8
4,362,703	+	dipZ	b4136	0.79	-0.7
4,362,711	-	dipZ	b4136	0.79	+0.3
4,362,711	-	dipZ	b4136	0.79	-0.7
4,362,745	+	dipZ	b4136	0.81	+1.6
4,362,745	+	dipZ	b4136	0.81	-0.8
4,362,807	-	dipZ	b4136	0.85	-0.2
4,362,918	+				-0.2
4,362,918	+				-1.8
4,362,926	-				-0.6
4,362,926	-				-0.0
4,362,926	-				-0.4
4,362,987	+				-0.1
4,363,082	-	cutA	b4137	0.12	+0.1
4,363,082	-	cutA	b4137	0.12	-0.3
4,363,086	+	cutA	b4137	0.13	+0.3
4,363,146	+	cutA	b4137	0.31	+0.7
4,363,152	-	cutA	b4137	0.33	+1.2
4,363,152	-	cutA	b4137	0.33	+0.8
4,363,188	+	cutA	b4137	0.43	+0.5
4,363,233	-	cutA	b4137	0.57	+0.5
4,363,233	-	cutA	b4137	0.57	+1.2
4,363,233	-	cutA	b4137	0.57	+0.7
4,363,302	+	cutA	b4137	0.77	+0.3
4,363,320	+	cutA	b4137	0.82	-0.8
4,363,332	+	cutA	b4137	0.86	+0.7
4,363,332	+	cutA	b4137	0.86	+0.0
4,363,333	-	cutA	b4137	0.86	-0.6
4,363,375	+				-0.1
4,363,376	+				-1.2
4,363,415	-				+0.2
4,363,430	-				-0.3
4,363,434	+				+0.2
4,363,442	-				+0.9
4,363,510	+				+0.2
4,363,542	-				-0.8
4,363,542	-				+0.7
4,363,547	-				-0.2
4,363,604	+				-0.0
4,363,604	+				+1.2
4,363,626	+	dcuA	b4138	0.10	-1.3
4,363,643	+	dcuA	b4138	0.11	-0.2
4,363,665	+	dcuA	b4138	0.13	-1.6
4,363,689	+	dcuA	b4138	0.15	-0.0
4,363,760	+	dcuA	b4138	0.20	+0.2
4,363,760	+	dcuA	b4138	0.20	-0.2
4,363,762	+	dcuA	b4138	0.21	+0.0
4,363,762	+	dcuA	b4138	0.21	-0.3
4,363,768	-	dcuA	b4138	0.21	+0.9
4,363,768	-	dcuA	b4138	0.21	-0.7
4,363,803	+	dcuA	b4138	0.24	-0.1
4,363,813	+	dcuA	b4138	0.24	+0.5
4,363,813	+	dcuA	b4138	0.24	+0.8
4,363,848	+	dcuA	b4138	0.27	+0.6
4,363,848	+	dcuA	b4138	0.27	+0.4
4,363,920	-	dcuA	b4138	0.33	-0.3
4,363,939	-	dcuA	b4138	0.34	-0.2
4,364,018	-	dcuA	b4138	0.40	+0.4
4,364,032	-	dcuA	b4138	0.41	-1.0
4,364,032	-	dcuA	b4138	0.41	-0.4
4,364,051	-	dcuA	b4138	0.43	-0.4
4,364,051	-	dcuA	b4138	0.43	-0.7