Strain Fitness in Escherichia coli BW25113 around b3163

Experiment: limonene 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	limonene 5 vol%
3,305,070	+	deaD	b3162	0.57	+0.3
3,305,070	+	deaD	b3162	0.57	+2.7
3,305,078	-	deaD	b3162	0.57	+3.1
3,305,323	-	deaD	b3162	0.70	+0.6
3,305,323	-	deaD	b3162	0.70	+1.6
3,305,435	+	deaD	b3162	0.76	+2.4
3,305,435	+	deaD	b3162	0.76	+1.1
3,305,452	-	deaD	b3162	0.77	+1.5
3,305,517	-				-0.5
3,305,536	+	deaD	b3162	0.82	+0.8
3,305,593	-	deaD	b3162	0.85	+1.7
3,305,593	-	deaD	b3162	0.85	+1.1
3,305,593	-	deaD	b3162	0.85	+0.9
3,305,593	-	deaD	b3162	0.85	+1.7
3,305,617	-	deaD	b3162	0.86	+1.5
3,305,621	-	deaD	b3162	0.86	+1.5
3,305,621	-	deaD	b3162	0.86	+1.1
3,305,660	-	deaD	b3162	0.88	+1.3
3,305,768	+				-0.2
3,305,768	+				+0.7
3,305,844	-				+0.5
3,305,881	+				+0.7
3,305,884	+	yrbN	b4685	0.11	+1.8
3,305,884	+	yrbN	b4685	0.11	+0.8
3,305,884	+	yrbN	b4685	0.11	+0.5
3,305,889	-	yrbN	b4685	0.17	+0.6
3,305,889	-	yrbN	b4685	0.17	+0.5
3,305,892	-	yrbN	b4685	0.21	+1.3
3,305,892	-	yrbN	b4685	0.21	+2.1
3,305,915	+	yrbN	b4685	0.49	+0.7
3,305,926	-	yrbN	b4685	0.63	+1.5
3,305,960	-				-0.5
3,305,962	+				+1.5
3,306,073	-				+0.4
3,306,103	-				-0.9
3,306,171	+	nlpI	b3163	0.12	+0.1
3,306,189	-	nlpI	b3163	0.14	-1.4
3,306,189	-	nlpI	b3163	0.14	-2.0
3,306,192	-	nlpI	b3163	0.15	+1.5
3,306,216	-	nlpI	b3163	0.17	-1.6
3,306,275	-	nlpI	b3163	0.24	-2.0
3,306,275	-	nlpI	b3163	0.24	-0.5
3,306,640	-	nlpI	b3163	0.65	-0.2
3,306,640	-	nlpI	b3163	0.65	-0.2
3,306,652	-	nlpI	b3163	0.67	-1.6
3,306,676	+	nlpI	b3163	0.69	-1.8
3,306,712	+	nlpI	b3163	0.73	-2.2
3,306,728	+	nlpI	b3163	0.75	+0.3
3,306,729	+	nlpI	b3163	0.75	-1.5
3,306,855	-	nlpI	b3163	0.90	-1.4
3,307,056	+				-0.7
3,307,056	+				-3.2
3,307,069	-				+0.9
3,307,069	-				+0.3
3,307,074	-				-0.4
3,307,095	-				-0.3
3,307,117	+				-1.2
3,307,200	-				+0.5
3,307,247	-				+1.1
3,307,279	-	pnp	b3164	0.10	-0.0
3,307,314	-	pnp	b3164	0.12	+0.3
3,307,354	-	pnp	b3164	0.14	-0.0
3,307,359	-	pnp	b3164	0.14	-1.8
3,307,371	-	pnp	b3164	0.15	-1.1
3,307,471	-	pnp	b3164	0.19	+0.1