Strain Fitness in Escherichia coli BW25113 around b2079
Experiment: limonene 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | limonene 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,161,414 | + | baeS | b2078 | 0.37 | +1.9 |
2,161,414 | + | baeS | b2078 | 0.37 | -0.1 |
2,161,693 | - | baeS | b2078 | 0.56 | +0.8 |
2,161,701 | - | baeS | b2078 | 0.57 | -0.3 |
2,161,761 | - | baeS | b2078 | 0.61 | +1.3 |
2,161,761 | - | baeS | b2078 | 0.61 | +0.6 |
2,161,938 | - | baeS | b2078 | 0.74 | +0.1 |
2,161,938 | - | baeS | b2078 | 0.74 | +0.6 |
2,162,005 | - | baeS | b2078 | 0.79 | -0.0 |
2,162,077 | - | baeS | b2078 | 0.84 | +0.3 |
2,162,219 | + | +0.3 | |||
2,162,259 | + | -0.9 | |||
2,162,379 | + | baeR | b2079 | 0.11 | +0.6 |
2,162,448 | - | baeR | b2079 | 0.20 | +0.1 |
2,162,491 | + | baeR | b2079 | 0.26 | +0.9 |
2,162,510 | + | baeR | b2079 | 0.29 | -0.1 |
2,162,648 | + | baeR | b2079 | 0.48 | -0.0 |
2,162,817 | + | baeR | b2079 | 0.72 | +0.2 |
2,162,817 | + | baeR | b2079 | 0.72 | +0.4 |
2,162,863 | + | baeR | b2079 | 0.78 | -0.1 |
2,162,997 | - | -0.2 | |||
2,163,076 | + | +0.3 | |||
2,163,084 | - | +0.2 | |||
2,163,084 | - | -0.1 | |||
2,163,217 | - | -0.1 | |||
2,163,246 | + | -1.0 | |||
2,163,350 | + | b2080 | b2080 | 0.41 | +0.7 |
2,163,536 | - | -0.5 | |||
2,163,571 | - | +0.2 | |||
2,163,571 | - | +0.2 | |||
2,163,599 | - | +0.1 | |||
2,163,599 | - | +0.2 | |||
2,163,635 | + | +0.2 | |||
2,163,725 | + | +0.5 | |||
2,163,733 | + | +0.3 | |||
2,163,765 | + | +0.6 | |||
2,163,851 | - | yegQ | b2081 | 0.12 | -1.2 |
2,163,901 | + | yegQ | b2081 | 0.15 | +0.3 |
2,163,902 | + | yegQ | b2081 | 0.15 | +0.1 |
Or see this region's nucleotide sequence