Strain Fitness in Pseudomonas putida KT2440 around PP_5745

Experiment: Geraniol 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5SD and PP_0598 are separated by 258 nucleotidesPP_0598 and PP_5745 overlap by 14 nucleotidesPP_5745 and PP_0599 overlap by 8 nucleotides PP_5SD: PP_5SD - 5S ribosomal RNA, at 702,884 to 703,003 _5SD PP_0598: PP_0598 - paraquat-inducible protein A, at 703,262 to 703,921 _0598 PP_5745: PP_5745 - paraquat-inducible protein A, at 703,908 to 704,531 _5745 PP_0599: PP_0599 - paraquat-inducible protein B, at 704,524 to 706,824 _0599 Position (kb) 703 704 705Strain fitness (log2 ratio) -3 -2 -1 0 1at 703.138 kb on + strandat 703.226 kb on + strandat 703.226 kb on + strandat 703.227 kb on - strandat 703.227 kb on - strandat 703.232 kb on - strandat 703.232 kb on - strandat 703.246 kb on + strandat 703.247 kb on - strandat 703.247 kb on - strandat 703.247 kb on - strandat 703.249 kb on - strandat 703.261 kb on + strandat 703.261 kb on + strandat 703.261 kb on + strandat 703.262 kb on - strandat 703.262 kb on - strandat 703.407 kb on - strand, within PP_0598at 703.407 kb on - strand, within PP_0598at 703.407 kb on - strand, within PP_0598at 703.407 kb on - strand, within PP_0598at 703.407 kb on - strand, within PP_0598at 703.531 kb on + strand, within PP_0598at 703.551 kb on + strand, within PP_0598at 703.551 kb on + strandat 703.552 kb on - strand, within PP_0598at 703.552 kb on - strand, within PP_0598at 703.559 kb on + strand, within PP_0598at 703.559 kb on + strand, within PP_0598at 703.559 kb on + strand, within PP_0598at 703.559 kb on + strand, within PP_0598at 703.560 kb on - strand, within PP_0598at 703.560 kb on - strand, within PP_0598at 703.560 kb on - strand, within PP_0598at 703.593 kb on + strand, within PP_0598at 703.593 kb on + strand, within PP_0598at 703.593 kb on + strand, within PP_0598at 703.593 kb on + strand, within PP_0598at 703.593 kb on + strand, within PP_0598at 703.594 kb on - strand, within PP_0598at 703.594 kb on - strand, within PP_0598at 703.594 kb on - strand, within PP_0598at 703.594 kb on - strand, within PP_0598at 703.603 kb on + strand, within PP_0598at 703.603 kb on + strand, within PP_0598at 703.603 kb on + strand, within PP_0598at 703.603 kb on + strand, within PP_0598at 703.604 kb on - strand, within PP_0598at 703.604 kb on - strand, within PP_0598at 703.604 kb on - strand, within PP_0598at 703.604 kb on - strand, within PP_0598at 703.682 kb on + strand, within PP_0598at 703.682 kb on + strand, within PP_0598at 703.683 kb on - strand, within PP_0598at 703.698 kb on - strand, within PP_0598at 703.706 kb on + strand, within PP_0598at 703.707 kb on - strandat 703.742 kb on + strand, within PP_0598at 703.834 kb on - strand, within PP_0598at 703.834 kb on - strand, within PP_0598at 703.834 kb on - strand, within PP_0598at 703.834 kb on - strand, within PP_0598at 704.036 kb on + strand, within PP_5745at 704.079 kb on + strand, within PP_5745at 704.095 kb on + strand, within PP_5745at 704.095 kb on + strand, within PP_5745at 704.095 kb on + strand, within PP_5745at 704.095 kb on + strand, within PP_5745at 704.095 kb on + strand, within PP_5745at 704.096 kb on - strand, within PP_5745at 704.096 kb on - strand, within PP_5745at 704.096 kb on - strand, within PP_5745at 704.096 kb on - strand, within PP_5745at 704.097 kb on - strand, within PP_5745at 704.216 kb on + strand, within PP_5745at 704.262 kb on + strand, within PP_5745at 704.262 kb on + strand, within PP_5745at 704.262 kb on + strand, within PP_5745at 704.263 kb on - strand, within PP_5745at 704.306 kb on - strand, within PP_5745at 704.313 kb on + strand, within PP_5745at 704.402 kb on - strand, within PP_5745at 704.402 kb on - strand, within PP_5745at 704.473 kb on + strandat 704.474 kb on - strandat 704.502 kb on - strandat 704.682 kb on + strandat 704.683 kb on - strandat 704.683 kb on - strandat 704.784 kb on + strand, within PP_0599at 704.784 kb on + strand, within PP_0599at 704.819 kb on + strand, within PP_0599at 704.819 kb on + strand, within PP_0599at 704.820 kb on - strand, within PP_0599at 704.820 kb on - strand, within PP_0599at 704.820 kb on - strand, within PP_0599at 704.871 kb on + strand, within PP_0599at 704.873 kb on + strand, within PP_0599at 704.874 kb on - strand, within PP_0599at 704.874 kb on - strand, within PP_0599at 704.905 kb on + strand, within PP_0599at 704.905 kb on + strand, within PP_0599at 704.905 kb on + strand, within PP_0599at 704.906 kb on - strand, within PP_0599at 704.906 kb on - strand, within PP_0599at 704.906 kb on - strand, within PP_0599at 704.938 kb on - strand, within PP_0599at 705.055 kb on + strand, within PP_0599at 705.056 kb on - strandat 705.056 kb on - strand, within PP_0599at 705.056 kb on - strand, within PP_0599at 705.056 kb on - strand, within PP_0599at 705.116 kb on + strand, within PP_0599at 705.145 kb on + strand, within PP_0599at 705.264 kb on + strand, within PP_0599at 705.335 kb on - strand, within PP_0599at 705.427 kb on + strand, within PP_0599at 705.427 kb on + strand, within PP_0599at 705.427 kb on + strand, within PP_0599at 705.427 kb on + strand, within PP_0599at 705.427 kb on + strand, within PP_0599at 705.427 kb on + strand, within PP_0599at 705.427 kb on + strand, within PP_0599at 705.428 kb on - strand, within PP_0599at 705.428 kb on - strand, within PP_0599at 705.526 kb on + strand, within PP_0599at 705.526 kb on + strand, within PP_0599at 705.527 kb on - strand, within PP_0599

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Per-strain Table

Position Strand Gene LocusTag Fraction Geraniol 1 vol%
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703,138 + -0.3
703,226 + -1.1
703,226 + -0.3
703,227 - -0.1
703,227 - -0.2
703,232 - +0.6
703,232 - -1.3
703,246 + +0.0
703,247 - -0.8
703,247 - -0.0
703,247 - -0.4
703,249 - -0.8
703,261 + -1.1
703,261 + +0.9
703,261 + -0.7
703,262 - -1.0
703,262 - -0.2
703,407 - PP_0598 0.22 -0.3
703,407 - PP_0598 0.22 -0.2
703,407 - PP_0598 0.22 -0.1
703,407 - PP_0598 0.22 -2.8
703,407 - PP_0598 0.22 -1.8
703,531 + PP_0598 0.41 +0.4
703,551 + PP_0598 0.44 -1.6
703,551 + +0.3
703,552 - PP_0598 0.44 +0.2
703,552 - PP_0598 0.44 +0.1
703,559 + PP_0598 0.45 -1.0
703,559 + PP_0598 0.45 -0.2
703,559 + PP_0598 0.45 +0.1
703,559 + PP_0598 0.45 -2.5
703,560 - PP_0598 0.45 -0.5
703,560 - PP_0598 0.45 -2.2
703,560 - PP_0598 0.45 -0.8
703,593 + PP_0598 0.50 -2.3
703,593 + PP_0598 0.50 -1.8
703,593 + PP_0598 0.50 -0.7
703,593 + PP_0598 0.50 -0.6
703,593 + PP_0598 0.50 -1.9
703,594 - PP_0598 0.50 -0.8
703,594 - PP_0598 0.50 -0.8
703,594 - PP_0598 0.50 -0.1
703,594 - PP_0598 0.50 -0.3
703,603 + PP_0598 0.52 -0.9
703,603 + PP_0598 0.52 -1.0
703,603 + PP_0598 0.52 -1.9
703,603 + PP_0598 0.52 -1.0
703,604 - PP_0598 0.52 -0.6
703,604 - PP_0598 0.52 +0.2
703,604 - PP_0598 0.52 -0.7
703,604 - PP_0598 0.52 -1.2
703,682 + PP_0598 0.64 -1.4
703,682 + PP_0598 0.64 -0.3
703,683 - PP_0598 0.64 -0.3
703,698 - PP_0598 0.66 +0.6
703,706 + PP_0598 0.67 -1.8
703,707 - +0.9
703,742 + PP_0598 0.73 -0.8
703,834 - PP_0598 0.87 -1.5
703,834 - PP_0598 0.87 -0.6
703,834 - PP_0598 0.87 -0.5
703,834 - PP_0598 0.87 -0.7
704,036 + PP_5745 0.21 -1.2
704,079 + PP_5745 0.27 -1.4
704,095 + PP_5745 0.30 -0.9
704,095 + PP_5745 0.30 -0.2
704,095 + PP_5745 0.30 -0.2
704,095 + PP_5745 0.30 -1.8
704,095 + PP_5745 0.30 -1.0
704,096 - PP_5745 0.30 +1.0
704,096 - PP_5745 0.30 -2.0
704,096 - PP_5745 0.30 +0.1
704,096 - PP_5745 0.30 -2.0
704,097 - PP_5745 0.30 -1.7
704,216 + PP_5745 0.49 -0.6
704,262 + PP_5745 0.57 -2.1
704,262 + PP_5745 0.57 +0.9
704,262 + PP_5745 0.57 -0.1
704,263 - PP_5745 0.57 -0.4
704,306 - PP_5745 0.64 -1.7
704,313 + PP_5745 0.65 -1.2
704,402 - PP_5745 0.79 -0.7
704,402 - PP_5745 0.79 +0.2
704,473 + -1.2
704,474 - -1.2
704,502 - -1.9
704,682 + -1.4
704,683 - -1.1
704,683 - -0.4
704,784 + PP_0599 0.11 -0.6
704,784 + PP_0599 0.11 -3.0
704,819 + PP_0599 0.13 -2.2
704,819 + PP_0599 0.13 -1.2
704,820 - PP_0599 0.13 +1.3
704,820 - PP_0599 0.13 -1.2
704,820 - PP_0599 0.13 -1.2
704,871 + PP_0599 0.15 -1.3
704,873 + PP_0599 0.15 -1.3
704,874 - PP_0599 0.15 -0.9
704,874 - PP_0599 0.15 -2.8
704,905 + PP_0599 0.17 -0.7
704,905 + PP_0599 0.17 +0.5
704,905 + PP_0599 0.17 -2.0
704,906 - PP_0599 0.17 -0.6
704,906 - PP_0599 0.17 +1.4
704,906 - PP_0599 0.17 -0.8
704,938 - PP_0599 0.18 -0.6
705,055 + PP_0599 0.23 -0.6
705,056 - -0.1
705,056 - PP_0599 0.23 -0.5
705,056 - PP_0599 0.23 -0.4
705,056 - PP_0599 0.23 -1.6
705,116 + PP_0599 0.26 -0.9
705,145 + PP_0599 0.27 -1.3
705,264 + PP_0599 0.32 -0.8
705,335 - PP_0599 0.35 -0.9
705,427 + PP_0599 0.39 -1.7
705,427 + PP_0599 0.39 -2.0
705,427 + PP_0599 0.39 -0.8
705,427 + PP_0599 0.39 -0.0
705,427 + PP_0599 0.39 -2.3
705,427 + PP_0599 0.39 -0.4
705,427 + PP_0599 0.39 -0.4
705,428 - PP_0599 0.39 -0.9
705,428 - PP_0599 0.39 -1.4
705,526 + PP_0599 0.44 -1.5
705,526 + PP_0599 0.44 -3.6
705,527 - PP_0599 0.44 -2.1

Or see this region's nucleotide sequence