Strain Fitness in Pseudomonas putida KT2440 around PP_5329

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
6,076,438	-				-2.0
6,076,598	-				+0.3
6,076,598	-				-0.1
6,076,598	-				+0.7
6,076,693	+				+0.3
6,076,693	+				+0.0
6,076,693	+				-1.1
6,076,697	+				-1.5
6,076,697	+				-0.1
6,076,697	+				-1.6
6,076,697	+				+1.0
6,076,698	-				-1.1
6,076,698	-				+0.4
6,076,698	-				-0.2
6,076,701	+				-1.7
6,076,701	+				-0.1
6,076,702	-				-0.5
6,076,702	-				-0.6
6,076,702	-				+0.1
6,076,782	+				-1.5
6,076,782	+				-0.6
6,076,782	+				-3.4
6,076,783	-				-1.7
6,076,864	-		PP_5329	0.16	-1.3
6,076,884	+		PP_5329	0.18	-1.9
6,077,004	+		PP_5329	0.30	-2.5
6,077,004	+		PP_5329	0.30	-2.6
6,077,005	-		PP_5329	0.31	-0.3
6,077,090	-		PP_5329	0.39	+2.0
6,077,130	+		PP_5329	0.43	-2.7
6,077,131	-		PP_5329	0.43	+0.4
6,077,131	-		PP_5329	0.43	+0.0
6,077,136	+		PP_5329	0.44	-1.8
6,077,136	+		PP_5329	0.44	-1.6
6,077,136	+		PP_5329	0.44	-2.3
6,077,136	+		PP_5329	0.44	+0.0
6,077,137	-		PP_5329	0.44	-1.7
6,077,361	+		PP_5329	0.66	-2.2
6,077,368	-		PP_5329	0.67	-1.3
6,077,368	-		PP_5329	0.67	-0.6
6,077,492	+		PP_5329	0.79	-1.6
6,077,514	+		PP_5329	0.81	-0.8
6,077,515	-		PP_5329	0.82	-0.3
6,077,515	-		PP_5329	0.82	-1.4
6,077,601	+				-0.1
6,077,602	-				-1.4
6,077,668	+				-0.8
6,077,767	+				-0.7
6,077,767	+				-2.1
6,077,767	+				-2.8
6,077,767	+				-2.5
6,077,768	-				-1.1
6,077,772	+				-2.4
6,077,772	+				-2.0
6,077,773	-				+0.2
6,077,837	+				+0.2
6,077,850	-				+0.6
6,077,850	-				-0.8
6,077,884	+				+0.1
6,077,885	-				+0.4
6,077,885	-				-0.8
6,077,891	+				-0.6
6,077,891	+				-0.0
6,077,959	-				-0.2
6,078,001	-				-0.5
6,078,004	-				-0.4
6,078,004	-				-0.4
6,078,004	-				+0.7
6,078,144	+		PP_5330	0.16	-0.3
6,078,144	+		PP_5330	0.16	+0.1
6,078,144	+		PP_5330	0.16	+0.6
6,078,144	+		PP_5330	0.16	+0.6
6,078,145	-		PP_5330	0.16	+0.6
6,078,145	-		PP_5330	0.16	-0.0
6,078,145	-		PP_5330	0.16	-0.9
6,078,145	-		PP_5330	0.16	+0.6
6,078,145	-		PP_5330	0.16	-0.6
6,078,145	-		PP_5330	0.16	-0.8
6,078,145	-		PP_5330	0.16	-0.6
6,078,231	+		PP_5330	0.23	-0.3
6,078,322	+		PP_5330	0.30	+0.4
6,078,322	+		PP_5330	0.30	+0.4
6,078,323	-		PP_5330	0.30	-0.3
6,078,323	-		PP_5330	0.30	+0.4
6,078,323	-		PP_5330	0.30	-0.2
6,078,323	-		PP_5330	0.30	+0.9
6,078,323	-		PP_5330	0.30	-0.5
6,078,323	-		PP_5330	0.30	-0.5
6,078,323	-		PP_5330	0.30	-0.6
6,078,390	+		PP_5330	0.35	+0.0
6,078,390	+		PP_5330	0.35	-0.2
6,078,390	+		PP_5330	0.35	+0.1
6,078,391	-		PP_5330	0.35	-0.5
6,078,391	-		PP_5330	0.35	-0.4
6,078,391	-		PP_5330	0.35	-0.8
6,078,391	-		PP_5330	0.35	+0.4
6,078,391	-		PP_5330	0.35	-0.8
6,078,431	+		PP_5330	0.38	-0.5
6,078,432	-		PP_5330	0.38	+1.2
6,078,432	-		PP_5330	0.38	-0.1
6,078,642	+		PP_5330	0.55	+0.3
6,078,642	+		PP_5330	0.55	-0.8
6,078,642	+		PP_5330	0.55	+0.6
6,078,643	-		PP_5330	0.55	-1.0
6,078,666	+		PP_5330	0.57	-0.2
6,078,667	-		PP_5330	0.57	+0.2