Strain Fitness in Pseudomonas putida KT2440 around PP_4980

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
5,671,759	+				+0.5
5,671,759	+				+0.4
5,671,853	+		PP_4979	0.13	+2.0
5,671,853	+		PP_4979	0.13	+2.1
5,671,853	+		PP_4979	0.13	+1.9
5,671,853	+		PP_4979	0.13	+0.6
5,671,854	-		PP_4979	0.13	+1.2
5,671,854	-		PP_4979	0.13	+1.3
5,671,854	-		PP_4979	0.13	+1.8
5,671,893	-		PP_4979	0.18	+1.1
5,671,893	-		PP_4979	0.18	+2.1
5,672,036	+		PP_4979	0.36	+0.6
5,672,037	-		PP_4979	0.36	+1.5
5,672,045	+		PP_4979	0.37	+1.2
5,672,045	+		PP_4979	0.37	+2.1
5,672,045	+		PP_4979	0.37	+1.7
5,672,045	+		PP_4979	0.37	+0.7
5,672,046	-		PP_4979	0.37	+1.3
5,672,046	-		PP_4979	0.37	+1.8
5,672,046	-		PP_4979	0.37	+1.6
5,672,218	+		PP_4979	0.59	+1.1
5,672,218	+		PP_4979	0.59	+0.9
5,672,218	+		PP_4979	0.59	+0.7
5,672,219	-		PP_4979	0.59	+0.8
5,672,219	-		PP_4979	0.59	+1.8
5,672,294	+		PP_4979	0.69	+1.8
5,672,295	-		PP_4979	0.69	+1.6
5,672,347	-		PP_4979	0.76	+2.0
5,672,367	-		PP_4979	0.78	+1.5
5,672,454	-		PP_4979	0.89	+0.2
5,672,474	+				+1.4
5,672,476	+				+1.5
5,672,476	+				+1.6
5,672,477	-				+1.0
5,672,546	+				+0.4
5,672,546	+				+0.8
5,672,549	-				+2.3
5,672,549	-				+2.1
5,672,818	+				+1.3
5,672,850	+				+1.8
5,672,851	-				+1.2
5,672,902	-				+1.9
5,672,907	+				+1.4
5,673,061	+		PP_4980	0.16	+1.4
5,673,061	+		PP_4980	0.16	+2.1
5,673,062	-		PP_4980	0.16	+1.0
5,673,440	+		PP_4980	0.36	+1.5
5,673,440	+		PP_4980	0.36	+1.7
5,673,442	+		PP_4980	0.36	+2.3
5,673,442	+		PP_4980	0.36	+1.4
5,673,443	-		PP_4980	0.36	+1.7
5,673,443	-		PP_4980	0.36	+1.5
5,673,754	+		PP_4980	0.53	+2.2
5,673,755	-		PP_4980	0.53	+1.7
5,673,755	-		PP_4980	0.53	+2.1
5,673,804	+		PP_4980	0.56	-0.5
5,673,805	-		PP_4980	0.56	+1.2
5,673,805	-		PP_4980	0.56	+2.1
5,673,911	+		PP_4980	0.61	+1.2
5,673,912	-		PP_4980	0.61	+1.7
5,673,996	+		PP_4980	0.66	+1.3
5,673,996	+		PP_4980	0.66	+1.1
5,673,996	+		PP_4980	0.66	+1.1
5,674,153	-		PP_4980	0.74	-0.1
5,674,237	+		PP_4980	0.79	+0.4
5,674,237	+		PP_4980	0.79	+1.6
5,674,237	+		PP_4980	0.79	+2.2
5,674,237	+		PP_4980	0.79	+0.3
5,674,237	+		PP_4980	0.79	+0.6
5,674,237	+		PP_4980	0.79	+0.3
5,674,639	+				-0.7
5,674,639	+				-1.4
5,674,640	-				+1.4
5,674,640	-				+0.1
5,674,645	+				+0.0
5,674,645	+				+0.5
5,674,646	-				+1.3
5,674,671	-				-0.1
5,674,779	+				+0.6
5,674,780	-				+0.5
5,674,807	+				+0.6
5,674,808	-				-0.9
5,675,050	-		PP_4981	0.44	-0.3
5,675,203	+		PP_4981	0.69	+0.0
5,675,221	-		PP_4981	0.72	+0.8
5,675,373	+				+0.2
5,675,374	-				-0.2
5,675,615	+		PP_4982	0.41	-0.1