Experiment: Geraniol 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4719 and PP_4720 are separated by 102 nucleotides PP_4720 and PP_4721 are separated by 12 nucleotides PP_4721 and PP_4722 overlap by 44 nucleotides PP_4722 and PP_4723 overlap by 4 nucleotides
PP_4719: PP_4719 - Ribosomal RNA large subunit methyltransferase E, at 5,366,753 to 5,367,376
_4719
PP_4720: PP_4720 - putative RNA binding protein, at 5,367,479 to 5,367,787
_4720
PP_4721: PP_4721 - conserved membrane protein of unknown function, at 5,367,800 to 5,368,270
_4721
PP_4722: PP_4722 - Transcription elongation factor GreA, at 5,368,227 to 5,368,709
_4722
PP_4723: PP_4723 - Carbamoyl-phosphate synthase large chain, at 5,368,706 to 5,371,936
_4723
Position (kb) 5367
5368
5369 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5367.392 kb on + strand at 5367.392 kb on + strand at 5367.393 kb on - strand at 5367.393 kb on - strand at 5367.479 kb on - strand at 5367.510 kb on - strand, within PP_4720 at 5367.510 kb on - strand, within PP_4720 at 5367.510 kb on - strand, within PP_4720 at 5367.779 kb on + strand at 5367.779 kb on + strand at 5367.780 kb on - strand at 5367.780 kb on - strand at 5367.780 kb on - strand at 5367.791 kb on + strand at 5367.791 kb on + strand at 5367.791 kb on + strand at 5367.792 kb on - strand at 5367.792 kb on - strand at 5367.792 kb on - strand at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.931 kb on - strand, within PP_4721 at 5368.272 kb on - strand at 5368.292 kb on + strand, within PP_4722 at 5368.292 kb on + strand, within PP_4722 at 5368.292 kb on + strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.390 kb on + strand, within PP_4722 at 5368.390 kb on + strand, within PP_4722 at 5368.391 kb on - strand, within PP_4722 at 5368.391 kb on - strand, within PP_4722 at 5368.391 kb on - strand, within PP_4722 at 5368.426 kb on - strand, within PP_4722 at 5368.561 kb on + strand, within PP_4722 at 5368.561 kb on + strand, within PP_4722 at 5368.700 kb on + strand at 5368.851 kb on + strand at 5369.194 kb on - strand, within PP_4723 at 5369.268 kb on + strand, within PP_4723 at 5369.269 kb on - strand, within PP_4723 at 5369.269 kb on - strand, within PP_4723 at 5369.269 kb on - strand, within PP_4723
Per-strain Table
Position Strand Gene LocusTag Fraction Geraniol 1 vol% remove 5,367,392 + -0.7 5,367,392 + +0.5 5,367,393 - -1.0 5,367,393 - +1.2 5,367,479 - -0.5 5,367,510 - PP_4720 0.10 +0.4 5,367,510 - PP_4720 0.10 +0.8 5,367,510 - PP_4720 0.10 +1.4 5,367,779 + +0.2 5,367,779 + -1.0 5,367,780 - -0.9 5,367,780 - +0.5 5,367,780 - +0.4 5,367,791 + +1.6 5,367,791 + +0.2 5,367,791 + -0.4 5,367,792 - -0.5 5,367,792 - +0.3 5,367,792 - +0.3 5,367,927 + PP_4721 0.27 +1.2 5,367,927 + PP_4721 0.27 -1.8 5,367,927 + PP_4721 0.27 -0.8 5,367,927 + PP_4721 0.27 -0.3 5,367,927 + PP_4721 0.27 -1.6 5,367,927 + PP_4721 0.27 -1.2 5,367,928 - PP_4721 0.27 +0.1 5,367,928 - PP_4721 0.27 -1.2 5,367,928 - PP_4721 0.27 -0.3 5,367,928 - PP_4721 0.27 -0.8 5,367,928 - PP_4721 0.27 -0.6 5,367,928 - PP_4721 0.27 -1.4 5,367,928 - PP_4721 0.27 -2.6 5,367,928 - PP_4721 0.27 -3.5 5,367,931 - PP_4721 0.28 -0.9 5,368,272 - -2.4 5,368,292 + PP_4722 0.13 -2.8 5,368,292 + PP_4722 0.13 -2.5 5,368,292 + PP_4722 0.13 -2.0 5,368,293 - PP_4722 0.14 -2.3 5,368,293 - PP_4722 0.14 -0.1 5,368,293 - PP_4722 0.14 -2.6 5,368,293 - PP_4722 0.14 -1.1 5,368,390 + PP_4722 0.34 -0.4 5,368,390 + PP_4722 0.34 -1.7 5,368,391 - PP_4722 0.34 -2.0 5,368,391 - PP_4722 0.34 -1.3 5,368,391 - PP_4722 0.34 -0.2 5,368,426 - PP_4722 0.41 -2.3 5,368,561 + PP_4722 0.69 -1.9 5,368,561 + PP_4722 0.69 +0.9 5,368,700 + -1.6 5,368,851 + -0.1 5,369,194 - PP_4723 0.15 -2.1 5,369,268 + PP_4723 0.17 -1.9 5,369,269 - PP_4723 0.17 -1.4 5,369,269 - PP_4723 0.17 -1.8 5,369,269 - PP_4723 0.17 -2.0
Or see this region's nucleotide sequence