Strain Fitness in Pseudomonas putida KT2440 around PP_4342

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
4,931,233	+		PP_4340	0.63	-0.7
4,931,234	-		PP_4340	0.64	+1.4
4,931,383	+				-0.7
4,931,383	+				-0.3
4,931,384	-				-0.9
4,931,416	+				-0.8
4,931,444	-				-0.6
4,931,444	-				+1.5
4,931,605	-		PP_4341	0.17	+3.6
4,931,605	-		PP_4341	0.17	+3.8
4,931,607	+		PP_4341	0.18	+3.6
4,931,608	-		PP_4341	0.18	+4.0
4,931,812	-		PP_4341	0.45	+4.0
4,931,812	-		PP_4341	0.45	+3.3
4,931,814	+		PP_4341	0.45	+3.4
4,931,814	+		PP_4341	0.45	+2.8
4,931,814	+		PP_4341	0.45	+3.5
4,931,814	+		PP_4341	0.45	+3.4
4,931,815	-		PP_4341	0.46	+3.4
4,931,911	+		PP_4341	0.59	+3.2
4,931,928	-		PP_4341	0.61	+2.8
4,932,031	-		PP_4341	0.75	+3.7
4,932,031	-		PP_4341	0.75	+3.4
4,932,121	-		PP_4341	0.87	+2.3
4,932,147	+				+3.1
4,932,166	-				+3.0
4,932,192	+				+3.8
4,932,192	+				+3.4
4,932,193	-				+2.8
4,932,193	-				+2.6
4,932,193	-				+2.8
4,932,217	+				+2.3
4,932,217	+				+1.2
4,932,217	+				+2.1
4,932,218	-				+3.5
4,932,218	-				+1.7
4,932,218	-				+3.2
4,932,218	-				+3.6
4,932,220	+				+3.1
4,932,220	+				+1.2
4,932,221	-				+3.6
4,932,221	-				+3.9
4,932,366	-		PP_4342	0.18	-2.2
4,932,428	+		PP_4342	0.26	-1.7
4,932,429	-		PP_4342	0.26	-0.6
4,932,429	-		PP_4342	0.26	-1.9
4,932,545	+		PP_4342	0.40	-2.0
4,932,594	+		PP_4342	0.46	-2.6
4,932,594	+		PP_4342	0.46	-1.6
4,932,595	-		PP_4342	0.46	-1.7
4,932,595	-		PP_4342	0.46	-1.1
4,932,595	-		PP_4342	0.46	-1.9
4,932,865	-		PP_4342	0.78	-0.6
4,932,877	-		PP_4342	0.79	-0.6
4,932,981	+				-0.3
4,932,981	+				-1.9
4,933,027	+				-2.4
4,933,028	-				-1.3
4,933,041	+				-0.3
4,933,058	+				-2.5
4,933,058	+				-0.9
4,933,059	-				-0.6
4,933,059	-				-1.6
4,933,059	-				-0.6
4,933,059	-				-2.1
4,933,059	-				+0.9
4,933,059	-				-0.7
4,933,117	-				-1.6
4,933,166	+				-0.9
4,933,166	+				-3.4
4,933,167	-				+2.0
4,933,301	+		PP_4343	0.12	-1.6
4,933,301	+		PP_4343	0.12	-2.9
4,933,302	-		PP_4343	0.12	-0.1
4,933,302	-		PP_4343	0.12	+0.3
4,933,406	+		PP_4343	0.20	+0.1
4,933,406	+		PP_4343	0.20	-1.3
4,933,406	+		PP_4343	0.20	-2.4
4,933,406	+		PP_4343	0.20	-0.6
4,933,407	-		PP_4343	0.20	+3.7
4,933,407	-		PP_4343	0.20	+4.2
4,933,407	-		PP_4343	0.20	+4.0
4,933,415	+		PP_4343	0.21	-1.3
4,933,463	+		PP_4343	0.25	-0.0
4,933,464	-		PP_4343	0.25	+3.3
4,933,545	+		PP_4343	0.31	-2.0
4,933,546	-		PP_4343	0.31	+3.9
4,933,731	-		PP_4343	0.45	+3.1