Strain Fitness in Pseudomonas putida KT2440 around PP_3745

Experiment: Geraniol 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3744 and PP_3745 are separated by 167 nucleotidesPP_3745 and PP_3746 overlap by 1 nucleotides PP_3744: PP_3744 - transcriptional dual regulator GlcC-Glycolate, at 4,273,085 to 4,273,876 _3744 PP_3745: PP_3745 - glycolate oxidase, putative FAD-linked subunit, at 4,274,044 to 4,275,543 _3745 PP_3746: PP_3746 - glycolate oxidase, putative FAD-binding subunit, at 4,275,543 to 4,276,595 _3746 Position (kb) 4274 4275 4276Strain fitness (log2 ratio) -2 -1 0 1 2at 4273.073 kb on + strandat 4273.074 kb on - strandat 4273.102 kb on + strandat 4273.103 kb on - strandat 4273.163 kb on + strandat 4273.163 kb on + strandat 4273.174 kb on + strand, within PP_3744at 4273.174 kb on + strand, within PP_3744at 4273.174 kb on + strand, within PP_3744at 4273.175 kb on - strand, within PP_3744at 4273.175 kb on - strand, within PP_3744at 4273.175 kb on - strand, within PP_3744at 4273.282 kb on - strand, within PP_3744at 4273.343 kb on - strand, within PP_3744at 4273.361 kb on - strand, within PP_3744at 4273.361 kb on - strand, within PP_3744at 4273.479 kb on - strand, within PP_3744at 4273.606 kb on + strand, within PP_3744at 4273.606 kb on + strand, within PP_3744at 4273.884 kb on + strandat 4273.885 kb on + strandat 4273.885 kb on - strandat 4273.917 kb on + strandat 4273.917 kb on + strandat 4274.049 kb on + strandat 4274.050 kb on - strandat 4274.198 kb on - strand, within PP_3745at 4274.376 kb on + strand, within PP_3745at 4274.427 kb on - strand, within PP_3745at 4274.466 kb on + strand, within PP_3745at 4274.466 kb on + strand, within PP_3745at 4274.466 kb on + strand, within PP_3745at 4274.466 kb on + strand, within PP_3745at 4274.467 kb on - strand, within PP_3745at 4274.467 kb on - strand, within PP_3745at 4274.467 kb on - strand, within PP_3745at 4274.467 kb on - strand, within PP_3745at 4274.467 kb on - strand, within PP_3745at 4274.467 kb on - strand, within PP_3745at 4274.470 kb on + strand, within PP_3745at 4274.470 kb on + strand, within PP_3745at 4274.470 kb on + strand, within PP_3745at 4274.471 kb on - strand, within PP_3745at 4274.471 kb on - strand, within PP_3745at 4274.471 kb on - strand, within PP_3745at 4274.473 kb on + strand, within PP_3745at 4274.473 kb on + strand, within PP_3745at 4274.473 kb on + strand, within PP_3745at 4274.473 kb on + strand, within PP_3745at 4274.474 kb on - strand, within PP_3745at 4274.474 kb on - strand, within PP_3745at 4274.557 kb on + strand, within PP_3745at 4274.558 kb on - strand, within PP_3745at 4274.558 kb on - strand, within PP_3745at 4274.598 kb on + strand, within PP_3745at 4274.599 kb on - strand, within PP_3745at 4274.599 kb on - strand, within PP_3745at 4274.753 kb on + strand, within PP_3745at 4275.097 kb on + strand, within PP_3745at 4275.097 kb on + strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.098 kb on - strand, within PP_3745at 4275.132 kb on - strand, within PP_3745at 4275.172 kb on + strand, within PP_3745at 4275.173 kb on - strand, within PP_3745at 4275.608 kb on + strandat 4275.609 kb on - strandat 4275.674 kb on - strand, within PP_3746at 4275.708 kb on + strand, within PP_3746at 4275.709 kb on - strand, within PP_3746at 4275.709 kb on - strand, within PP_3746at 4275.728 kb on - strand, within PP_3746at 4275.905 kb on - strand, within PP_3746at 4276.069 kb on + strand, within PP_3746at 4276.182 kb on + strand, within PP_3746at 4276.183 kb on - strand, within PP_3746at 4276.471 kb on - strand, within PP_3746at 4276.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Geraniol 1 vol%
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4,273,073 + -1.4
4,273,074 - -1.6
4,273,102 + -0.6
4,273,103 - -0.2
4,273,163 + +0.7
4,273,163 + -0.5
4,273,174 + PP_3744 0.11 -0.4
4,273,174 + PP_3744 0.11 +0.6
4,273,174 + PP_3744 0.11 -1.1
4,273,175 - PP_3744 0.11 -0.8
4,273,175 - PP_3744 0.11 -0.2
4,273,175 - PP_3744 0.11 +0.9
4,273,282 - PP_3744 0.25 +0.1
4,273,343 - PP_3744 0.33 -0.2
4,273,361 - PP_3744 0.35 +0.2
4,273,361 - PP_3744 0.35 +0.7
4,273,479 - PP_3744 0.50 +0.5
4,273,606 + PP_3744 0.66 -0.7
4,273,606 + PP_3744 0.66 -0.0
4,273,884 + +0.3
4,273,885 + -0.0
4,273,885 - -0.3
4,273,917 + +0.6
4,273,917 + +0.4
4,274,049 + -1.0
4,274,050 - +0.7
4,274,198 - PP_3745 0.10 +1.1
4,274,376 + PP_3745 0.22 -0.7
4,274,427 - PP_3745 0.26 -1.4
4,274,466 + PP_3745 0.28 -0.2
4,274,466 + PP_3745 0.28 -0.8
4,274,466 + PP_3745 0.28 -0.7
4,274,466 + PP_3745 0.28 +0.8
4,274,467 - PP_3745 0.28 +1.9
4,274,467 - PP_3745 0.28 +0.3
4,274,467 - PP_3745 0.28 +0.0
4,274,467 - PP_3745 0.28 +0.2
4,274,467 - PP_3745 0.28 +0.0
4,274,467 - PP_3745 0.28 -0.8
4,274,470 + PP_3745 0.28 -0.1
4,274,470 + PP_3745 0.28 +0.4
4,274,470 + PP_3745 0.28 +0.2
4,274,471 - PP_3745 0.28 -0.5
4,274,471 - PP_3745 0.28 -0.4
4,274,471 - PP_3745 0.28 +0.3
4,274,473 + PP_3745 0.29 -0.3
4,274,473 + PP_3745 0.29 -0.6
4,274,473 + PP_3745 0.29 +0.8
4,274,473 + PP_3745 0.29 +0.1
4,274,474 - PP_3745 0.29 +0.6
4,274,474 - PP_3745 0.29 -0.4
4,274,557 + PP_3745 0.34 -0.6
4,274,558 - PP_3745 0.34 +0.0
4,274,558 - PP_3745 0.34 +0.9
4,274,598 + PP_3745 0.37 -0.4
4,274,599 - PP_3745 0.37 +0.6
4,274,599 - PP_3745 0.37 -0.0
4,274,753 + PP_3745 0.47 -0.8
4,275,097 + PP_3745 0.70 -1.4
4,275,097 + PP_3745 0.70 +0.4
4,275,098 - PP_3745 0.70 -0.8
4,275,098 - PP_3745 0.70 -0.5
4,275,098 - PP_3745 0.70 +0.1
4,275,098 - PP_3745 0.70 +0.4
4,275,098 - PP_3745 0.70 -0.2
4,275,098 - PP_3745 0.70 -0.1
4,275,098 - PP_3745 0.70 +1.1
4,275,098 - PP_3745 0.70 +0.2
4,275,098 - PP_3745 0.70 -0.4
4,275,132 - PP_3745 0.73 -0.6
4,275,172 + PP_3745 0.75 -0.2
4,275,173 - PP_3745 0.75 -0.2
4,275,608 + -1.4
4,275,609 - -0.4
4,275,674 - PP_3746 0.12 -0.6
4,275,708 + PP_3746 0.16 +0.9
4,275,709 - PP_3746 0.16 -0.2
4,275,709 - PP_3746 0.16 +0.6
4,275,728 - PP_3746 0.18 -2.5
4,275,905 - PP_3746 0.34 -0.4
4,276,069 + PP_3746 0.50 +0.5
4,276,182 + PP_3746 0.61 +0.4
4,276,183 - PP_3746 0.61 +0.3
4,276,471 - PP_3746 0.88 -0.6
4,276,521 + -0.0

Or see this region's nucleotide sequence