Strain Fitness in Pseudomonas putida KT2440 around PP_3711

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
4,232,631	+		PP_3710	0.65	+0.6
4,232,632	-		PP_3710	0.65	+0.1
4,232,668	-		PP_3710	0.73	+0.7
4,232,683	+		PP_3710	0.76	+0.7
4,232,684	-		PP_3710	0.76	+0.2
4,232,684	-		PP_3710	0.76	+0.7
4,232,684	-		PP_3710	0.76	+0.5
4,232,713	+		PP_3710	0.82	+1.0
4,232,713	+		PP_3710	0.82	-1.0
4,232,713	+		PP_3710	0.82	+0.1
4,232,714	-		PP_3710	0.83	+1.4
4,232,714	-		PP_3710	0.83	-0.0
4,232,714	-		PP_3710	0.83	+1.2
4,232,721	+		PP_3710	0.84	-0.3
4,232,721	+		PP_3710	0.84	-0.6
4,232,721	+		PP_3710	0.84	+0.3
4,232,722	-		PP_3710	0.84	-0.5
4,232,751	+				-0.2
4,232,834	+				-0.3
4,232,834	+				-0.1
4,232,849	+				+1.1
4,232,881	-				+0.8
4,232,881	-				+0.2
4,232,881	-				+0.9
4,232,903	-				+0.0
4,232,967	-		PP_5626	0.23	-0.9
4,232,978	-		PP_5626	0.25	+0.6
4,232,978	-		PP_5626	0.25	-0.7
4,232,981	+		PP_5626	0.26	-0.3
4,232,982	-		PP_5626	0.26	+0.9
4,233,044	+		PP_5626	0.39	+0.4
4,233,044	+		PP_5626	0.39	+1.0
4,233,045	-		PP_5626	0.40	-0.4
4,233,045	-		PP_5626	0.40	-2.2
4,233,045	-		PP_5626	0.40	+0.1
4,233,045	-		PP_5626	0.40	-0.0
4,233,045	-		PP_5626	0.40	-0.2
4,233,171	+		PP_5626	0.67	+0.1
4,233,172	-				+0.7
4,233,172	-		PP_5626	0.67	-0.6
4,233,172	-		PP_5626	0.67	-0.6
4,233,180	-		PP_5626	0.69	-0.3
4,233,289	+				+0.8
4,233,289	+				-1.0
4,233,289	+				-0.2
4,233,290	-				+0.5
4,233,290	-				-0.6
4,233,346	+				+0.2
4,233,347	-				+0.1
4,233,378	+				+0.5
4,233,379	-				+0.8
4,233,464	+				-0.8
4,233,464	+				-1.6
4,233,465	-				+1.0
4,233,465	-				-0.2
4,233,547	-				+0.4
4,233,547	-				+1.3
4,233,547	-				+0.9
4,233,547	-				-0.7
4,233,547	-				-1.2
4,233,663	-				-0.7
4,233,765	-		PP_3711	0.14	+0.5
4,233,765	-		PP_3711	0.14	-0.7
4,233,771	+		PP_3711	0.14	-0.9
4,233,780	+		PP_3711	0.15	-1.4
4,233,780	+		PP_3711	0.15	-0.4
4,233,794	+		PP_3711	0.16	-1.3
4,233,795	-		PP_3711	0.16	-2.1
4,233,943	-		PP_3711	0.26	-0.8
4,234,203	+		PP_3711	0.43	-0.4
4,234,203	+		PP_3711	0.43	+0.1
4,234,204	-		PP_3711	0.43	-1.0
4,234,304	+		PP_3711	0.50	-0.6
4,234,305	-		PP_3711	0.50	+0.4
4,234,305	-		PP_3711	0.50	-0.5
4,234,305	-		PP_3711	0.50	+0.1
4,234,640	+		PP_3711	0.72	-0.0
4,234,640	+		PP_3711	0.72	-0.1
4,234,640	+		PP_3711	0.72	-0.2
4,234,641	-		PP_3711	0.72	-0.1
4,234,889	+		PP_3711	0.88	+0.5
4,234,901	+		PP_3711	0.89	-0.2
4,234,902	-		PP_3711	0.89	-0.5
4,234,902	-		PP_3711	0.89	-0.5
4,234,974	+				+0.1
4,234,975	-				-1.0
4,234,975	-				-1.3
4,234,994	+				+0.4
4,234,995	-				-1.2
4,234,995	-				-0.7
4,234,995	-				-0.1
4,234,995	-				-0.5
4,234,995	-				-0.3
4,235,003	+				+0.5
4,235,004	-				-0.9
4,235,004	-				+0.1
4,235,033	+				-0.2
4,235,033	+				-0.6
4,235,033	-				-0.4
4,235,034	-				+0.9
4,235,071	+				+0.1
4,235,191	+				-1.6
4,235,191	+				-0.6
4,235,191	+				+0.7
4,235,198	+				+0.1
4,235,356	+		PP_3712	0.26	-0.4
4,235,431	+		PP_3712	0.41	-0.5
4,235,593	+		PP_3712	0.74	-0.4
4,235,594	-		PP_3712	0.74	-1.1
4,235,644	+		PP_3712	0.84	+1.4
4,235,645	-		PP_3712	0.85	-0.2
4,235,650	+		PP_3712	0.86	+1.0
4,235,650	+		PP_3712	0.86	-0.7
4,235,651	-		PP_3712	0.86	-0.6
4,235,651	-		PP_3712	0.86	-0.5
4,235,651	-		PP_3712	0.86	-0.7
4,235,660	-		PP_3712	0.88	+0.7
4,235,751	+				+0.5
4,235,751	+				-0.3
4,235,826	+				+0.1
4,235,826	+				+0.7
4,235,827	-				-0.2
4,235,827	-				-0.2
4,236,018	+		PP_3713	0.19	-0.5
4,236,039	+		PP_3713	0.22	-0.3