Strain Fitness in Pseudomonas putida KT2440 around PP_3636

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
4,130,966	+		PP_3634	0.82	-0.9
4,130,967	-		PP_3634	0.82	+0.9
4,130,967	-		PP_3634	0.82	+0.0
4,130,967	-		PP_3634	0.82	+0.4
4,130,967	-		PP_3634	0.82	-1.1
4,131,129	+				+0.4
4,131,129	+				-0.1
4,131,129	+				-0.8
4,131,130	-				+0.9
4,131,155	+				+1.0
4,131,155	+				-1.2
4,131,156	-				+0.1
4,131,156	-				+1.1
4,131,156	-				-1.0
4,131,156	-				+1.0
4,131,388	+		PP_3635	0.25	-0.9
4,131,388	+		PP_3635	0.25	-0.9
4,131,576	+		PP_3635	0.50	-0.1
4,131,576	+		PP_3635	0.50	+0.5
4,131,638	+		PP_3635	0.58	+0.3
4,131,639	-		PP_3635	0.58	-0.1
4,131,775	+		PP_3635	0.76	-0.8
4,131,775	+		PP_3635	0.76	+0.4
4,131,775	+		PP_3635	0.76	+0.2
4,131,776	-		PP_3635	0.76	+1.1
4,131,776	-		PP_3635	0.76	+3.3
4,131,783	+		PP_3635	0.77	+1.1
4,131,879	-		PP_3635	0.90	+0.6
4,131,879	-		PP_3635	0.90	+0.3
4,131,879	-		PP_3635	0.90	+1.9
4,131,879	-		PP_3635	0.90	+0.1
4,131,894	-				+0.6
4,131,894	-				-0.2
4,131,894	-				+0.3
4,131,894	-				+0.6
4,131,938	+				+0.5
4,131,938	+				-1.5
4,131,939	-				+0.2
4,132,018	+				+0.8
4,132,018	+				+0.1
4,132,018	+				-1.3
4,132,019	-				+0.1
4,132,019	-				+0.1
4,132,073	+				+1.1
4,132,073	+				+1.1
4,132,074	-				+1.0
4,132,101	+		PP_3636	0.12	+0.1
4,132,101	+		PP_3636	0.12	-0.4
4,132,102	-		PP_3636	0.12	-0.0
4,132,102	-		PP_3636	0.12	-0.7
4,132,169	+		PP_3636	0.18	+0.6
4,132,233	-		PP_3636	0.23	+1.2
4,132,233	-		PP_3636	0.23	+1.0
4,132,298	+		PP_3636	0.28	-0.0
4,132,298	+		PP_3636	0.28	+1.6
4,132,299	-		PP_3636	0.29	-0.0
4,132,413	+		PP_3636	0.38	+0.5
4,132,465	+		PP_3636	0.42	+0.8
4,132,465	+		PP_3636	0.42	+0.2
4,132,466	-		PP_3636	0.42	+0.1
4,132,466	-		PP_3636	0.42	+0.1
4,132,495	+		PP_3636	0.45	-0.6
4,132,495	+		PP_3636	0.45	-0.3
4,132,496	-		PP_3636	0.45	+1.0
4,132,541	+		PP_3636	0.49	-0.0
4,132,541	+		PP_3636	0.49	+1.1
4,132,684	+		PP_3636	0.60	+0.4
4,132,684	+		PP_3636	0.60	-0.2
4,132,703	+		PP_3636	0.62	+0.7
4,132,753	+		PP_3636	0.66	+0.6
4,132,753	+		PP_3636	0.66	+0.6
4,132,753	+		PP_3636	0.66	+0.6
4,132,754	-		PP_3636	0.66	+1.1
4,132,754	-		PP_3636	0.66	+1.7
4,132,754	-		PP_3636	0.66	+0.6
4,132,754	-		PP_3636	0.66	-0.0
4,132,754	-		PP_3636	0.66	+0.2
4,132,755	+		PP_3636	0.66	+0.5
4,132,755	+		PP_3636	0.66	+0.2
4,132,756	-		PP_3636	0.66	+0.5
4,132,756	-		PP_3636	0.66	+0.4
4,132,971	+		PP_3636	0.84	+0.6
4,132,972	-		PP_3636	0.84	+1.1
4,132,972	-		PP_3636	0.84	+1.2
4,132,972	-		PP_3636	0.84	+0.1
4,133,192	-				-0.5
4,133,192	-				+0.6
4,133,333	+		PP_3637	0.23	-0.5
4,134,086	+		PP_3638	0.11	+0.2
4,134,087	-		PP_3638	0.11	+0.2
4,134,087	-		PP_3638	0.11	-0.3
4,134,087	-		PP_3638	0.11	-0.5
4,134,087	-		PP_3638	0.11	+0.5
4,134,087	-		PP_3638	0.11	+2.1
4,134,121	+		PP_3638	0.15	+0.2