Experiment: Geraniol 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3593 and PP_3594 are separated by 104 nucleotides PP_3594 and PP_3595 overlap by 4 nucleotides PP_3595 and PP_3596 are separated by 16 nucleotides
PP_3593: PP_3593 - L-lysine and D-lysine ABC transporter, substrate-binding component <small>(from data)</small>, at 4,083,002 to 4,083,754
_3593
PP_3594: PP_3594 - L-lysine and D-lysine ABC transporter, permease component 1 <small>(from data)</small>, at 4,083,859 to 4,084,578
_3594
PP_3595: PP_3595 - L-lysine and D-lysine ABC transporter, permease component 2 <small>(from data)</small>, at 4,084,575 to 4,085,285
_3595
PP_3596: PP_3596 - D-lysine oxidase, at 4,085,302 to 4,086,546
_3596
Position (kb) 4084
4085
4086 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4083.746 kb on + strand at 4083.747 kb on - strand at 4083.747 kb on - strand at 4083.837 kb on + strand at 4084.093 kb on + strand, within PP_3594 at 4084.093 kb on + strand, within PP_3594 at 4084.093 kb on + strand, within PP_3594 at 4084.093 kb on + strand, within PP_3594 at 4084.093 kb on + strand, within PP_3594 at 4084.093 kb on + strand, within PP_3594 at 4084.093 kb on + strand, within PP_3594 at 4084.094 kb on - strand, within PP_3594 at 4084.096 kb on + strand, within PP_3594 at 4084.096 kb on + strand, within PP_3594 at 4084.287 kb on + strand, within PP_3594 at 4084.448 kb on + strand, within PP_3594 at 4084.448 kb on + strand, within PP_3594 at 4084.492 kb on + strand, within PP_3594 at 4084.532 kb on - strand at 4084.770 kb on + strand, within PP_3595 at 4084.771 kb on - strand, within PP_3595 at 4084.776 kb on + strand, within PP_3595 at 4084.776 kb on + strand, within PP_3595 at 4084.777 kb on - strand, within PP_3595 at 4084.777 kb on - strand, within PP_3595 at 4084.821 kb on + strand, within PP_3595 at 4084.821 kb on + strand, within PP_3595 at 4084.822 kb on - strand, within PP_3595 at 4084.824 kb on + strand, within PP_3595 at 4084.825 kb on - strand at 4084.825 kb on - strand, within PP_3595 at 4084.932 kb on + strand, within PP_3595 at 4085.038 kb on + strand, within PP_3595 at 4085.038 kb on + strand, within PP_3595 at 4085.133 kb on + strand, within PP_3595 at 4085.134 kb on - strand, within PP_3595 at 4085.190 kb on + strand, within PP_3595 at 4085.190 kb on + strand, within PP_3595 at 4085.211 kb on + strand, within PP_3595 at 4085.211 kb on + strand, within PP_3595 at 4085.384 kb on + strand at 4085.467 kb on + strand, within PP_3596 at 4085.533 kb on + strand, within PP_3596 at 4085.533 kb on + strand, within PP_3596 at 4085.533 kb on + strand, within PP_3596 at 4085.533 kb on + strand, within PP_3596 at 4085.534 kb on - strand, within PP_3596 at 4085.625 kb on + strand, within PP_3596 at 4085.626 kb on - strand, within PP_3596 at 4086.130 kb on + strand, within PP_3596 at 4086.131 kb on - strand, within PP_3596 at 4086.131 kb on - strand, within PP_3596 at 4086.187 kb on + strand, within PP_3596 at 4086.188 kb on - strand, within PP_3596 at 4086.191 kb on + strand, within PP_3596 at 4086.191 kb on + strand at 4086.191 kb on + strand, within PP_3596 at 4086.191 kb on + strand, within PP_3596 at 4086.191 kb on + strand, within PP_3596 at 4086.192 kb on - strand, within PP_3596
Per-strain Table
Position Strand Gene LocusTag Fraction Geraniol 1 vol% remove 4,083,746 + +1.9 4,083,747 - -0.6 4,083,747 - +0.9 4,083,837 + +0.9 4,084,093 + PP_3594 0.33 +0.1 4,084,093 + PP_3594 0.33 +0.2 4,084,093 + PP_3594 0.33 -0.2 4,084,093 + PP_3594 0.33 +0.8 4,084,093 + PP_3594 0.33 -2.5 4,084,093 + PP_3594 0.33 +1.1 4,084,093 + PP_3594 0.33 -0.7 4,084,094 - PP_3594 0.33 -1.4 4,084,096 + PP_3594 0.33 -0.2 4,084,096 + PP_3594 0.33 +1.4 4,084,287 + PP_3594 0.59 -1.1 4,084,448 + PP_3594 0.82 +0.2 4,084,448 + PP_3594 0.82 +3.4 4,084,492 + PP_3594 0.88 -0.6 4,084,532 - +0.8 4,084,770 + PP_3595 0.27 +0.0 4,084,771 - PP_3595 0.28 +0.3 4,084,776 + PP_3595 0.28 +0.4 4,084,776 + PP_3595 0.28 +2.2 4,084,777 - PP_3595 0.28 -0.0 4,084,777 - PP_3595 0.28 +1.0 4,084,821 + PP_3595 0.35 +0.4 4,084,821 + PP_3595 0.35 +0.7 4,084,822 - PP_3595 0.35 +0.5 4,084,824 + PP_3595 0.35 +0.4 4,084,825 - +1.1 4,084,825 - PP_3595 0.35 -0.9 4,084,932 + PP_3595 0.50 +0.7 4,085,038 + PP_3595 0.65 +1.1 4,085,038 + PP_3595 0.65 +0.7 4,085,133 + PP_3595 0.78 +0.4 4,085,134 - PP_3595 0.79 +1.6 4,085,190 + PP_3595 0.86 +1.3 4,085,190 + PP_3595 0.86 -0.9 4,085,211 + PP_3595 0.89 +0.8 4,085,211 + PP_3595 0.89 +2.1 4,085,384 + -0.5 4,085,467 + PP_3596 0.13 -0.1 4,085,533 + PP_3596 0.19 -2.4 4,085,533 + PP_3596 0.19 +0.5 4,085,533 + PP_3596 0.19 +1.0 4,085,533 + PP_3596 0.19 +0.2 4,085,534 - PP_3596 0.19 +0.4 4,085,625 + PP_3596 0.26 +1.0 4,085,626 - PP_3596 0.26 -0.2 4,086,130 + PP_3596 0.67 +0.0 4,086,131 - PP_3596 0.67 +1.2 4,086,131 - PP_3596 0.67 +0.3 4,086,187 + PP_3596 0.71 -0.6 4,086,188 - PP_3596 0.71 -1.9 4,086,191 + PP_3596 0.71 +1.4 4,086,191 + +0.1 4,086,191 + PP_3596 0.71 +0.1 4,086,191 + PP_3596 0.71 -1.9 4,086,191 + PP_3596 0.71 -0.1 4,086,192 - PP_3596 0.71 +0.3
Or see this region's nucleotide sequence