Strain Fitness in Pseudomonas putida KT2440 around PP_3436

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
3,891,674	+		PP_3435	0.41	+1.2
3,891,702	+		PP_3435	0.43	-0.0
3,891,702	+		PP_3435	0.43	+0.1
3,891,703	-		PP_3435	0.43	+0.2
3,891,956	+		PP_3435	0.59	-0.3
3,891,967	+		PP_3435	0.60	-1.0
3,891,967	+		PP_3435	0.60	+0.3
3,891,967	+		PP_3435	0.60	+0.2
3,891,968	-		PP_3435	0.60	+0.3
3,892,009	+				+2.7
3,892,009	+		PP_3435	0.63	+0.4
3,892,010	-		PP_3435	0.63	+0.5
3,892,010	-		PP_3435	0.63	-0.1
3,892,031	+		PP_3435	0.64	+0.8
3,892,195	+		PP_3435	0.74	+0.1
3,892,195	+		PP_3435	0.74	-0.7
3,892,289	+		PP_3435	0.80	-0.1
3,892,289	+		PP_3435	0.80	+0.2
3,892,290	-		PP_3435	0.80	+0.0
3,892,290	-		PP_3435	0.80	-0.1
3,892,313	+		PP_3435	0.82	-0.6
3,892,374	+		PP_3435	0.86	-2.3
3,892,374	+		PP_3435	0.86	+0.5
3,892,457	+				-0.3
3,892,494	-				+1.1
3,892,691	+				+1.3
3,892,691	+				+0.3
3,892,691	+				-0.2
3,892,692	-				-0.4
3,892,692	-				-0.3
3,892,692	-				-0.6
3,892,692	-				+1.0
3,892,697	+				-1.1
3,892,697	+				-0.8
3,892,697	+				-0.9
3,892,697	+				+0.1
3,892,698	-				+0.5
3,892,698	-				+0.5
3,892,698	-				+0.5
3,892,698	-				-0.4
3,892,698	-				+0.7
3,892,698	-				-0.0
3,892,699	+				-0.2
3,892,700	-				+0.3
3,892,700	-				+0.6
3,892,700	-				-0.3
3,892,700	-				+0.6
3,892,700	-				-0.5
3,892,950	-		PP_3436	0.35	+0.7
3,892,992	+		PP_3436	0.40	-1.1
3,892,992	+		PP_3436	0.40	-0.1
3,892,992	+		PP_3436	0.40	-2.2
3,892,992	+		PP_3436	0.40	-2.3
3,892,993	-		PP_3436	0.40	+0.1
3,892,994	+		PP_3436	0.40	+0.5
3,892,994	+		PP_3436	0.40	-0.7
3,893,123	+		PP_3436	0.55	+1.9
3,893,208	-		PP_3436	0.64	-0.9
3,893,264	+		PP_3436	0.71	-0.3
3,893,265	-		PP_3436	0.71	-0.6
3,893,308	+		PP_3436	0.76	-1.3
3,893,315	+		PP_3436	0.76	-1.3
3,893,316	-		PP_3436	0.76	-0.3
3,893,367	-		PP_3436	0.82	-0.2
3,893,441	+				-0.2
3,893,442	-				-0.2
3,893,442	-				+0.1
3,893,442	-				+0.7
3,893,463	+				-1.1
3,893,464	-				+0.7
3,893,500	-				+0.9
3,893,523	-				+0.1
3,893,538	+				+0.1
3,893,653	+		PP_3437	0.11	-0.1
3,893,684	+		PP_3437	0.13	-1.4
3,893,864	+		PP_3437	0.24	+0.3
3,893,865	-		PP_3437	0.24	-0.5
3,894,152	+		PP_3437	0.42	-1.3
3,894,314	+		PP_3437	0.53	-1.1
3,894,315	-		PP_3437	0.53	-0.1
3,894,315	-		PP_3437	0.53	+0.0
3,894,421	+		PP_3437	0.59	-1.3
3,894,422	-		PP_3437	0.59	+0.3
3,894,422	-		PP_3437	0.59	-0.3