Strain Fitness in Pseudomonas putida KT2440 around PP_2413

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
2,758,318	-				+0.6
2,758,319	+				+1.0
2,758,319	+				+0.2
2,758,320	-				+0.8
2,758,320	-				+0.3
2,758,346	-				-0.3
2,758,426	-				+2.0
2,758,499	+		PP_2412	0.16	-1.2
2,758,585	+		PP_2412	0.27	-0.3
2,758,733	+		PP_2412	0.46	-1.2
2,758,734	-		PP_2412	0.46	+0.7
2,758,775	+		PP_2412	0.51	-0.2
2,758,775	+		PP_2412	0.51	-0.4
2,758,775	+		PP_2412	0.51	+0.5
2,758,776	-		PP_2412	0.51	+0.0
2,758,776	-		PP_2412	0.51	-0.8
2,758,893	-		PP_2412	0.66	+1.6
2,759,013	-		PP_2412	0.81	+0.4
2,759,168	+				+0.2
2,759,195	-				+0.0
2,759,259	-				-0.9
2,759,293	+				+0.6
2,759,293	+				-0.6
2,759,471	-				-1.7
2,759,618	-		PP_2413	0.19	-1.7
2,759,861	+		PP_2413	0.34	-1.5
2,759,862	-		PP_2413	0.34	-1.0
2,760,223	-		PP_2413	0.56	+0.6
2,760,233	+		PP_2413	0.57	-1.3
2,760,234	-		PP_2413	0.57	-1.2
2,760,263	+		PP_2413	0.58	-1.8
2,760,263	+		PP_2413	0.58	-1.5
2,760,263	+		PP_2413	0.58	-1.4
2,760,264	-		PP_2413	0.58	-2.3
2,760,264	-		PP_2413	0.58	-0.4
2,760,264	-		PP_2413	0.58	-0.4
2,760,264	-		PP_2413	0.58	-0.4
2,760,264	-		PP_2413	0.58	-1.7
2,760,264	-		PP_2413	0.58	-0.5
2,760,270	-		PP_2413	0.59	-1.0
2,760,270	-		PP_2413	0.59	-1.2
2,760,284	+		PP_2413	0.60	-1.8
2,760,284	+		PP_2413	0.60	-1.9
2,760,285	-		PP_2413	0.60	-2.3
2,760,285	-		PP_2413	0.60	-1.7
2,760,332	+		PP_2413	0.63	-0.6
2,760,333	-		PP_2413	0.63	-2.0
2,760,333	-		PP_2413	0.63	-1.6
2,760,350	+				+1.6
2,760,350	+		PP_2413	0.64	-4.1
2,760,351	-		PP_2413	0.64	-0.2
2,760,524	-		PP_2413	0.74	-0.8
2,760,535	+				+0.0
2,760,535	+		PP_2413	0.75	-0.3
2,760,535	+		PP_2413	0.75	-0.0
2,760,535	+		PP_2413	0.75	-1.0
2,760,536	-		PP_2413	0.75	-0.7
2,760,536	-		PP_2413	0.75	-2.1
2,760,643	+		PP_2413	0.82	-0.7
2,760,644	-		PP_2413	0.82	-1.4
2,760,719	+		PP_2413	0.86	-2.0
2,760,719	+		PP_2413	0.86	-1.4
2,760,719	+		PP_2413	0.86	-1.0
2,760,720	-		PP_2413	0.86	-0.8
2,760,720	-		PP_2413	0.86	-2.4
2,760,720	-		PP_2413	0.86	-2.4
2,760,754	+		PP_2413	0.88	-2.2
2,760,754	+		PP_2413	0.88	-1.2
2,760,755	-		PP_2413	0.89	-1.2
2,760,841	-				-0.3
2,760,841	-				-1.4
2,760,841	-				-3.4
2,760,841	-				-2.3
2,760,841	-				-3.1
2,760,844	+				-2.2
2,760,844	+				-1.0
2,760,844	+				-0.4
2,760,845	-				-0.7
2,760,845	-				-0.5
2,760,845	-				+0.2
2,760,921	+				-1.7
2,760,922	-				+4.3
2,760,922	-				+3.9
2,760,922	-				+3.8
2,761,169	-		PP_2414	0.48	+3.2
2,761,169	-		PP_2414	0.48	+3.0
2,761,222	-		PP_2414	0.59	+3.4
2,761,300	+		PP_2414	0.75	+0.4
2,761,393	-				+0.1
2,761,453	+				-1.9
2,761,454	-				+0.0
2,761,455	+				-0.5
2,761,456	-				+1.4
2,761,456	-				+0.6
2,761,522	+		PP_2415	0.16	-0.8
2,761,693	+		PP_2415	0.43	-0.4
2,761,694	-		PP_2415	0.43	+1.6
2,761,694	-		PP_2415	0.43	-0.9
2,761,694	-		PP_2415	0.43	+1.4
2,761,694	-		PP_2415	0.43	+1.6
2,761,759	+		PP_2415	0.54	+1.6
2,761,760	-		PP_2415	0.54	+0.1
2,761,768	+		PP_2415	0.55	-0.2
2,761,769	-		PP_2415	0.55	+0.9
2,761,925	-		PP_2415	0.80	+0.7
2,761,925	-		PP_2415	0.80	+0.9
2,761,932	+		PP_2415	0.81	-0.3
2,761,932	+		PP_2415	0.81	+0.4
2,761,932	+		PP_2415	0.81	-0.1
2,761,933	-		PP_2415	0.81	+0.8
2,761,933	-				+0.9