Experiment: Geraniol 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_16SD and PP_t05 are separated by 85 nucleotides PP_t05 and PP_t06 are separated by 24 nucleotides PP_t06 and PP_23SD are separated by 243 nucleotides PP_23SD and PP_5SD are separated by 131 nucleotides PP_5SD and PP_0598 are separated by 258 nucleotides
PP_16SD: PP_16SD - 16S ribosomal RNA, at 697,824 to 699,345
_16SD
PP_t05: PP_t05 - tRNA-Ile, at 699,431 to 699,507
_t05
PP_t06: PP_t06 - tRNA-Ala, at 699,532 to 699,607
_t06
PP_23SD: PP_23SD - 23S ribosomal RNA, at 699,851 to 702,752
_23SD
PP_5SD: PP_5SD - 5S ribosomal RNA, at 702,884 to 703,003
_5SD
PP_0598: PP_0598 - paraquat-inducible protein A, at 703,262 to 703,921
_0598
Position (kb) 699
700
701
702
703 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 703.138 kb on + strand at 703.226 kb on + strand at 703.226 kb on + strand at 703.227 kb on - strand at 703.227 kb on - strand at 703.232 kb on - strand at 703.232 kb on - strand at 703.246 kb on + strand at 703.247 kb on - strand at 703.247 kb on - strand at 703.247 kb on - strand at 703.249 kb on - strand at 703.261 kb on + strand at 703.261 kb on + strand at 703.261 kb on + strand at 703.262 kb on - strand at 703.262 kb on - strand at 703.407 kb on - strand, within PP_0598 at 703.407 kb on - strand, within PP_0598 at 703.407 kb on - strand, within PP_0598 at 703.407 kb on - strand, within PP_0598 at 703.407 kb on - strand, within PP_0598 at 703.531 kb on + strand, within PP_0598 at 703.551 kb on + strand, within PP_0598 at 703.551 kb on + strand at 703.552 kb on - strand, within PP_0598 at 703.552 kb on - strand, within PP_0598 at 703.559 kb on + strand, within PP_0598 at 703.559 kb on + strand, within PP_0598 at 703.559 kb on + strand, within PP_0598 at 703.559 kb on + strand, within PP_0598 at 703.560 kb on - strand, within PP_0598 at 703.560 kb on - strand, within PP_0598 at 703.560 kb on - strand, within PP_0598 at 703.593 kb on + strand, within PP_0598 at 703.593 kb on + strand, within PP_0598 at 703.593 kb on + strand, within PP_0598 at 703.593 kb on + strand, within PP_0598 at 703.593 kb on + strand, within PP_0598 at 703.594 kb on - strand, within PP_0598 at 703.594 kb on - strand, within PP_0598 at 703.594 kb on - strand, within PP_0598 at 703.594 kb on - strand, within PP_0598 at 703.603 kb on + strand, within PP_0598 at 703.603 kb on + strand, within PP_0598 at 703.603 kb on + strand, within PP_0598 at 703.603 kb on + strand, within PP_0598 at 703.604 kb on - strand, within PP_0598 at 703.604 kb on - strand, within PP_0598 at 703.604 kb on - strand, within PP_0598 at 703.604 kb on - strand, within PP_0598 at 703.682 kb on + strand, within PP_0598 at 703.682 kb on + strand, within PP_0598 at 703.683 kb on - strand, within PP_0598 at 703.698 kb on - strand, within PP_0598 at 703.706 kb on + strand, within PP_0598 at 703.707 kb on - strand at 703.742 kb on + strand, within PP_0598
Per-strain Table
Position Strand Gene LocusTag Fraction Geraniol 1 vol% remove 703,138 + -0.3 703,226 + -1.1 703,226 + -0.3 703,227 - -0.1 703,227 - -0.2 703,232 - +0.6 703,232 - -1.3 703,246 + +0.0 703,247 - -0.8 703,247 - -0.0 703,247 - -0.4 703,249 - -0.8 703,261 + -1.1 703,261 + +0.9 703,261 + -0.7 703,262 - -1.0 703,262 - -0.2 703,407 - PP_0598 0.22 -0.3 703,407 - PP_0598 0.22 -0.2 703,407 - PP_0598 0.22 -0.1 703,407 - PP_0598 0.22 -2.8 703,407 - PP_0598 0.22 -1.8 703,531 + PP_0598 0.41 +0.4 703,551 + PP_0598 0.44 -1.6 703,551 + +0.3 703,552 - PP_0598 0.44 +0.2 703,552 - PP_0598 0.44 +0.1 703,559 + PP_0598 0.45 -1.0 703,559 + PP_0598 0.45 -0.2 703,559 + PP_0598 0.45 +0.1 703,559 + PP_0598 0.45 -2.5 703,560 - PP_0598 0.45 -0.5 703,560 - PP_0598 0.45 -2.2 703,560 - PP_0598 0.45 -0.8 703,593 + PP_0598 0.50 -2.3 703,593 + PP_0598 0.50 -1.8 703,593 + PP_0598 0.50 -0.7 703,593 + PP_0598 0.50 -0.6 703,593 + PP_0598 0.50 -1.9 703,594 - PP_0598 0.50 -0.8 703,594 - PP_0598 0.50 -0.8 703,594 - PP_0598 0.50 -0.1 703,594 - PP_0598 0.50 -0.3 703,603 + PP_0598 0.52 -0.9 703,603 + PP_0598 0.52 -1.0 703,603 + PP_0598 0.52 -1.9 703,603 + PP_0598 0.52 -1.0 703,604 - PP_0598 0.52 -0.6 703,604 - PP_0598 0.52 +0.2 703,604 - PP_0598 0.52 -0.7 703,604 - PP_0598 0.52 -1.2 703,682 + PP_0598 0.64 -1.4 703,682 + PP_0598 0.64 -0.3 703,683 - PP_0598 0.64 -0.3 703,698 - PP_0598 0.66 +0.6 703,706 + PP_0598 0.67 -1.8 703,707 - +0.9 703,742 + PP_0598 0.73 -0.8
Or see this region's nucleotide sequence