Strain Fitness in Pseudomonas putida KT2440 around PP_2372

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
2,708,470	-		PP_2371	0.55	+0.5
2,708,470	-		PP_2371	0.55	+0.5
2,708,600	+		PP_2371	0.63	-0.6
2,708,600	+		PP_2371	0.63	+0.9
2,708,600	+		PP_2371	0.63	+0.5
2,708,727	+		PP_2371	0.71	+1.5
2,708,976	+		PP_2371	0.86	-0.1
2,708,977	-		PP_2371	0.86	-1.0
2,709,072	+				+0.3
2,709,072	+				+1.6
2,709,072	+				+1.2
2,709,072	+				-0.0
2,709,072	+				+2.2
2,709,072	+				+0.8
2,709,072	+				+0.6
2,709,072	+				+0.5
2,709,072	+				-1.5
2,709,072	+				+0.3
2,709,072	+				+0.7
2,709,073	-				+0.9
2,709,073	-				+0.2
2,709,073	-				+0.4
2,709,073	-				+1.0
2,709,073	-				+1.6
2,709,075	-				-1.4
2,709,075	-				+0.5
2,709,198	+				-0.5
2,709,199	-				+1.8
2,709,200	+				+0.3
2,709,200	+				-0.0
2,709,200	+				+0.4
2,709,201	-				+1.9
2,709,201	-				+1.3
2,709,201	-				-2.2
2,709,201	-				+0.9
2,709,205	-				+1.6
2,709,205	-				+0.0
2,709,205	-				-0.4
2,709,205	-				+1.2
2,709,208	+				+1.6
2,709,208	+				+0.6
2,709,234	+				+1.5
2,709,280	+				+0.9
2,709,281	-				+0.7
2,709,416	+				-0.0
2,709,416	+				-0.6
2,709,539	+		PP_2372	0.11	-0.0
2,709,539	+		PP_2372	0.11	-0.1
2,709,539	+		PP_2372	0.11	-0.4
2,709,539	+		PP_2372	0.11	-1.1
2,709,539	+		PP_2372	0.11	-1.0
2,709,540	-		PP_2372	0.11	-0.8
2,709,540	-		PP_2372	0.11	-0.2
2,709,540	-		PP_2372	0.11	+0.0
2,709,540	-		PP_2372	0.11	-1.5
2,709,596	+		PP_2372	0.16	-0.9
2,709,596	+		PP_2372	0.16	-1.4
2,709,596	+		PP_2372	0.16	-2.4
2,709,596	+		PP_2372	0.16	-1.6
2,709,597	-		PP_2372	0.16	-0.1
2,709,597	-		PP_2372	0.16	+0.2
2,709,598	+		PP_2372	0.16	-1.7
2,709,598	+		PP_2372	0.16	-1.2
2,709,692	+		PP_2372	0.25	-1.5
2,709,692	+		PP_2372	0.25	-1.1
2,709,693	-		PP_2372	0.25	-2.0
2,709,693	-		PP_2372	0.25	-2.0
2,709,806	+		PP_2372	0.36	-0.5
2,709,807	-		PP_2372	0.36	-0.4
2,709,807	-		PP_2372	0.36	-0.7
2,709,807	-		PP_2372	0.36	+0.7
2,709,823	+		PP_2372	0.37	-0.7
2,709,823	+		PP_2372	0.37	-0.9
2,710,020	-		PP_2372	0.56	-1.0
2,710,046	+		PP_2372	0.58	-1.8
2,710,047	-		PP_2372	0.58	-1.4
2,710,239	+		PP_2372	0.76	-0.1
2,710,239	+		PP_2372	0.76	-2.7
2,710,240	-		PP_2372	0.76	-1.1
2,710,433	+				-0.3
2,710,533	+				-0.4
2,710,569	-		PP_2373	0.17	+0.1
2,710,677	+		PP_2373	0.87	-1.7
2,710,678	-		PP_2373	0.87	-0.1
2,710,721	-				+0.4
2,710,721	-				+1.2
2,710,721	-				-0.4
2,710,762	+				-0.4
2,710,796	+				-0.3
2,710,797	-				-0.9
2,710,825	+				-0.2
2,710,925	+				-0.4
2,710,975	+				+1.2
2,711,266	+				+0.0
2,711,266	+				-0.3
2,711,266	+				+0.2
2,711,267	-				-0.1
2,711,267	-				-1.0
2,711,267	-				+0.7
2,711,327	+				-0.3
2,711,327	+				-0.4
2,711,328	-				+1.4
2,711,355	+				+0.0
2,711,356	-				-0.5
2,711,398	-				-0.0
2,711,398	-				+0.8
2,711,417	-				-0.6
2,711,447	-				-1.1
2,711,470	-				+0.4