Strain Fitness in Pseudomonas putida KT2440 around PP_1841

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
2,063,280	+				+1.0
2,063,280	+				-0.1
2,063,281	-				-1.0
2,063,283	-				+0.5
2,063,301	+				-0.3
2,063,511	+		PP_1839	0.68	-0.1
2,063,512	-		PP_1839	0.68	-1.7
2,063,512	-		PP_1839	0.68	+0.6
2,063,512	-		PP_1839	0.68	+0.7
2,063,512	-		PP_1839	0.68	+0.2
2,063,547	+		PP_1839	0.83	+0.4
2,063,547	+		PP_1839	0.83	-0.4
2,063,547	+		PP_1839	0.83	-0.1
2,063,547	+		PP_1839	0.83	-0.9
2,063,547	+		PP_1839	0.83	+1.4
2,063,547	+		PP_1839	0.83	+1.0
2,063,547	+		PP_1839	0.83	-2.2
2,063,547	+		PP_1839	0.83	-0.2
2,063,547	+		PP_1839	0.83	+0.6
2,063,547	+		PP_1839	0.83	-0.7
2,063,548	-		PP_1839	0.84	+0.1
2,063,548	-		PP_1839	0.84	-0.2
2,063,548	-		PP_1839	0.84	+0.7
2,063,548	-		PP_1839	0.84	-1.1
2,063,548	-		PP_1839	0.84	-0.1
2,063,579	+				-1.1
2,063,580	-				-1.1
2,063,580	-				+0.1
2,063,637	-				-0.5
2,063,718	+				-0.9
2,063,719	-				-1.2
2,063,734	+				+0.9
2,063,735	-				+1.2
2,063,747	-				+0.4
2,063,747	-				-0.1
2,063,857	+		PP_1840	0.28	+1.5
2,063,857	+		PP_1840	0.28	-0.6
2,063,857	+		PP_1840	0.28	-1.1
2,063,857	+		PP_1840	0.28	+0.4
2,063,858	-		PP_1840	0.28	+0.0
2,063,858	-		PP_1840	0.28	+0.3
2,063,865	-		PP_1840	0.30	+1.4
2,063,865	-		PP_1840	0.30	+0.3
2,063,983	+		PP_1840	0.66	+0.7
2,063,983	+		PP_1840	0.66	-1.3
2,063,983	+		PP_1840	0.66	-0.7
2,063,983	+		PP_1840	0.66	-0.0
2,063,983	+		PP_1840	0.66	-0.3
2,063,983	+		PP_1840	0.66	+0.2
2,063,984	-		PP_1840	0.66	-0.8
2,063,984	-		PP_1840	0.66	+2.1
2,063,984	-		PP_1840	0.66	+0.2
2,063,984	-		PP_1840	0.66	-0.3
2,063,984	-		PP_1840	0.66	-1.2
2,064,043	+		PP_1840	0.84	+0.8
2,064,043	+				+1.7
2,064,135	+				+0.8
2,064,135	+				+0.3
2,064,135	+				+0.6
2,064,136	-				+0.4
2,064,168	+				+0.3
2,064,169	-				+0.1
2,064,190	+				-0.6
2,064,191	-				+0.4
2,064,191	-				+0.8
2,064,338	+		PP_1841	0.18	+2.2
2,064,338	+		PP_1841	0.18	+1.3
2,064,370	+		PP_1841	0.22	+1.6
2,064,372	+		PP_1841	0.22	+1.0
2,064,373	-		PP_1841	0.22	+1.2
2,064,616	-		PP_1841	0.52	+0.2
2,064,838	-		PP_1841	0.80	+0.8
2,064,843	-		PP_1841	0.81	+2.2
2,064,843	-		PP_1841	0.81	+2.1
2,064,843	-		PP_1841	0.81	+0.9
2,064,843	-		PP_1841	0.81	+1.6
2,064,857	-		PP_1841	0.82	+0.9
2,064,860	+		PP_1841	0.83	+1.9
2,064,997	+				+1.0
2,065,029	+				+1.0
2,065,100	+				-0.4
2,065,100	+				-1.1
2,065,100	+				-0.1
2,065,101	-				-0.8
2,065,101	-				-0.7
2,065,101	-				+0.4
2,065,101	-				-0.5
2,065,118	+				+0.3
2,065,181	+				+0.9
2,065,276	+				+0.6
2,065,276	+				+0.2
2,065,276	+				-0.1
2,065,276	+				-1.7
2,065,277	-				-0.1
2,065,277	-				+0.3
2,065,277	-				+0.5
2,065,278	+				+0.6
2,065,278	+				+0.4
2,065,278	+				-1.2
2,065,278	+				-0.3
2,065,278	+				+0.6
2,065,278	+				-0.3
2,065,278	+				+1.4
2,065,279	-				+0.1
2,065,279	-				-0.1
2,065,279	-				-1.6
2,065,290	+				-0.4
2,065,290	+				+0.2
2,065,290	+				-0.8
2,065,290	+				+1.0
2,065,291	-				-1.0
2,065,291	-				+0.4
2,065,291	-				-0.6
2,065,309	-				-0.3
2,065,309	-				-0.3
2,065,372	+				+1.0
2,065,373	-				+0.5
2,065,373	-				-0.4
2,065,377	-				+0.0
2,065,377	-				+0.5
2,065,390	+				+0.9
2,065,394	+				+0.2
2,065,395	-				-0.7
2,065,395	-				-0.6
2,065,395	-				+0.4
2,065,455	+				+0.3
2,065,456	-				-1.0
2,065,456	-				+1.5
2,065,456	-				-0.3
2,065,465	+				-1.4
2,065,465	+				-0.3
2,065,466	-				-1.1
2,065,466	-				-0.1
2,065,488	+				-0.5
2,065,489	-				+0.2
2,065,520	+				-2.0
2,065,520	+				-1.0
2,065,520	+				+0.2
2,065,526	+				-0.0
2,065,526	+				-0.1
2,065,527	-				-0.3
2,065,527	-				-1.8
2,065,527	-				-0.8
2,065,587	+				-0.4
2,065,657	-		PP_1842	0.18	-0.3
2,065,657	-		PP_1842	0.18	+0.2
2,065,707	+		PP_1842	0.24	-0.2
2,065,707	+		PP_1842	0.24	+0.5
2,065,708	-		PP_1842	0.25	+1.3
2,065,765	+		PP_1842	0.32	+0.7
2,065,788	+		PP_1842	0.36	-0.5
2,065,788	+		PP_1842	0.36	-0.0
2,065,788	+		PP_1842	0.36	-0.9