Strain Fitness in Pseudomonas putida KT2440 around PP_1720

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
1,919,735	+		PP_1719	0.66	-0.9
1,919,735	+		PP_1719	0.66	-2.9
1,919,736	-		PP_1719	0.66	-1.8
1,919,753	+		PP_1719	0.67	-2.3
1,919,754	-		PP_1719	0.67	-1.2
1,919,754	-		PP_1719	0.67	-2.0
1,919,754	-		PP_1719	0.67	-0.9
1,919,777	+		PP_1719	0.68	-1.9
1,919,778	-		PP_1719	0.68	+1.4
1,919,778	-		PP_1719	0.68	-0.6
1,919,778	-		PP_1719	0.68	-0.6
1,919,778	-		PP_1719	0.68	-1.1
1,920,080	+		PP_1719	0.82	-3.0
1,920,081	-		PP_1719	0.82	-1.1
1,920,176	+		PP_1719	0.87	-2.0
1,920,177	-		PP_1719	0.87	-1.2
1,920,177	-		PP_1719	0.87	-2.8
1,920,206	+		PP_1719	0.88	-2.2
1,920,207	-		PP_1719	0.88	-0.5
1,920,207	-		PP_1719	0.88	-2.6
1,920,207	-		PP_1719	0.88	-2.7
1,920,207	-		PP_1719	0.88	-1.5
1,920,207	-		PP_1719	0.88	-1.0
1,920,207	-		PP_1719	0.88	-2.9
1,920,207	-		PP_1719	0.88	-3.5
1,920,207	-		PP_1719	0.88	+0.1
1,920,215	+		PP_1719	0.89	-0.6
1,920,215	+		PP_1719	0.89	-2.8
1,920,216	-		PP_1719	0.89	-1.6
1,920,216	-		PP_1719	0.89	-0.9
1,920,216	-		PP_1719	0.89	-1.8
1,920,257	+				-0.9
1,920,258	-				-2.8
1,920,456	+				-1.2
1,920,456	+				-2.1
1,920,456	+				-1.8
1,920,456	+				-3.2
1,920,456	+				-1.6
1,920,457	-				-0.7
1,920,457	-				+0.2
1,920,457	-				-0.3
1,920,457	-				-1.0
1,920,457	-				-0.3
1,920,460	-				-0.2
1,920,460	-				-0.2
1,920,460	-				+1.6
1,920,460	-				-1.2
1,920,502	-				-0.0
1,920,502	-				-0.2
1,920,502	-				-0.7
1,920,551	+				-1.6
1,920,551	+				-1.6
1,920,552	-				-0.9
1,920,728	+		PP_1720	0.17	+0.2
1,920,728	+		PP_1720	0.17	+0.5
1,920,728	+		PP_1720	0.17	+0.6
1,920,728	+		PP_1720	0.17	-0.7
1,920,729	-		PP_1720	0.17	-0.0
1,920,729	-		PP_1720	0.17	-0.5
1,920,729	-		PP_1720	0.17	+0.5
1,920,729	-		PP_1720	0.17	+0.5
1,920,729	-		PP_1720	0.17	-0.2
1,920,861	+		PP_1720	0.31	-0.8
1,920,862	-		PP_1720	0.31	+1.0
1,920,917	+		PP_1720	0.37	+0.5
1,920,917	+		PP_1720	0.37	+0.3
1,920,917	+		PP_1720	0.37	+1.7
1,920,917	+		PP_1720	0.37	-0.3
1,920,918	-		PP_1720	0.37	-0.2
1,920,918	-		PP_1720	0.37	+0.1
1,920,918	-		PP_1720	0.37	+2.7
1,920,918	-		PP_1720	0.37	+0.2
1,921,082	+		PP_1720	0.54	+0.5
1,921,083	-		PP_1720	0.54	+1.5
1,921,116	+		PP_1720	0.57	-0.4
1,921,117	-		PP_1720	0.58	-0.0
1,921,117	-				+2.7
1,921,117	-		PP_1720	0.58	-0.3
1,921,120	+		PP_1720	0.58	+0.8
1,921,120	+		PP_1720	0.58	-0.1
1,921,120	+		PP_1720	0.58	-0.3
1,921,190	+		PP_1720	0.65	-0.3
1,921,191	-		PP_1720	0.65	+0.6
1,921,381	-		PP_1720	0.85	+0.0
1,921,431	-				+0.1
1,921,457	+				+0.1
1,921,457	+				-0.7
1,921,458	-				+0.0
1,921,458	-				+0.9
1,921,523	+				-0.0
1,921,577	+				-0.7
1,921,711	-				+1.1
1,921,785	+		PP_1721	0.30	-0.6
1,921,786	-		PP_1721	0.31	-0.4
1,921,816	-		PP_1721	0.35	-0.5
1,921,972	-		PP_1721	0.59	+0.5
1,922,070	+		PP_1721	0.74	-1.1
1,922,070	+		PP_1721	0.74	-0.4
1,922,070	+		PP_1721	0.74	+0.2
1,922,071	-		PP_1721	0.74	-0.0
1,922,071	-		PP_1721	0.74	-0.4
1,922,071	-		PP_1721	0.74	-0.2
1,922,071	-		PP_1721	0.74	+0.3
1,922,071	-		PP_1721	0.74	+0.7
1,922,100	+		PP_1721	0.79	-0.3
1,922,100	+				-0.9
1,922,100	+		PP_1721	0.79	+0.2
1,922,101	-		PP_1721	0.79	-0.2
1,922,101	-		PP_1721	0.79	-0.1
1,922,101	-		PP_1721	0.79	-2.4
1,922,296	+				-1.4
1,922,296	+				-0.1