Strain Fitness in Pseudomonas putida KT2440 around PP_1642

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
1,836,383	+				-0.3
1,836,383	+				+0.7
1,836,383	+				-1.7
1,836,384	-				+0.2
1,836,384	-				-0.2
1,836,384	-				+0.4
1,836,384	-				+0.7
1,836,393	+				-0.2
1,836,393	+				-0.4
1,836,393	+				-0.0
1,836,394	-				+0.4
1,836,395	+				+0.1
1,836,396	-				-0.4
1,836,396	-				+0.9
1,836,396	-				+0.1
1,836,396	-				-0.4
1,836,407	-				+0.1
1,836,410	+				-0.3
1,836,414	+				-0.3
1,836,415	-				+0.2
1,836,415	-				+1.0
1,836,415	-				+0.1
1,836,511	+				+0.1
1,836,628	+				+0.0
1,836,628	+				+0.1
1,836,688	+		PP_1641	0.16	+0.1
1,836,688	+		PP_1641	0.16	+1.0
1,836,689	-		PP_1641	0.16	+0.1
1,836,689	-		PP_1641	0.16	+0.8
1,836,689	-		PP_1641	0.16	+0.0
1,836,689	-		PP_1641	0.16	-0.5
1,836,689	-		PP_1641	0.16	+0.5
1,836,689	-		PP_1641	0.16	+1.3
1,836,794	+		PP_1641	0.29	+0.5
1,836,794	+		PP_1641	0.29	+0.8
1,836,795	-		PP_1641	0.29	+0.2
1,836,795	-		PP_1641	0.29	+0.1
1,836,795	-		PP_1641	0.29	-0.1
1,836,805	+		PP_1641	0.31	+1.3
1,836,829	+		PP_1641	0.33	-0.4
1,836,849	+		PP_1641	0.36	+0.4
1,836,849	+		PP_1641	0.36	+0.0
1,836,850	-		PP_1641	0.36	+0.2
1,836,850	-		PP_1641	0.36	+0.0
1,836,853	+		PP_1641	0.36	+1.7
1,836,854	-				+1.7
1,836,854	-		PP_1641	0.36	+0.3
1,836,863	+		PP_1641	0.38	-0.2
1,836,864	-		PP_1641	0.38	+0.3
1,836,931	+		PP_1641	0.46	+1.4
1,836,931	+		PP_1641	0.46	+0.3
1,836,931	+		PP_1641	0.46	+0.5
1,836,932	-		PP_1641	0.46	+0.1
1,837,100	-		PP_1641	0.66	-0.4
1,837,100	-		PP_1641	0.66	+0.2
1,837,100	-		PP_1641	0.66	+0.6
1,837,392	-				-0.9
1,837,392	-				+0.3
1,837,409	+				+0.7
1,837,410	-				+0.3
1,837,410	-				+0.0
1,837,410	-				-0.7
1,837,410	-				+0.5
1,837,410	-				+0.7
1,837,802	+		PP_1642	0.62	-0.8
1,838,111	+				-0.6
1,838,111	+				-0.8
1,838,111	+				+0.3
1,838,111	+				-0.6
1,838,111	+				-0.7
1,838,111	+				-1.6
1,838,112	-				-0.3
1,838,112	-				-0.7
1,838,112	-				-1.3
1,838,112	-				-2.6
1,838,125	+				-0.9
1,838,126	-				-0.6
1,838,159	-				+3.3
1,838,209	+		PP_1643	0.13	-1.1
1,838,210	-		PP_1643	0.13	-1.9
1,838,210	-		PP_1643	0.13	-0.5
1,838,210	-		PP_1643	0.13	-0.3
1,838,214	+		PP_1643	0.14	-1.5
1,838,215	-		PP_1643	0.14	-2.5
1,838,311	+		PP_1643	0.37	-2.7
1,838,315	+		PP_1643	0.38	-1.2
1,838,315	+		PP_1643	0.38	-0.2
1,838,316	-		PP_1643	0.38	-0.9
1,838,316	-		PP_1643	0.38	-0.4
1,838,554	+				-1.5
1,838,691	-		PP_1644	0.21	-0.4
1,838,691	-		PP_1644	0.21	-0.2
1,838,736	-		PP_1644	0.29	-1.2
1,838,900	+		PP_1644	0.56	-2.0
1,838,901	-		PP_1644	0.56	-1.9
1,838,901	-		PP_1644	0.56	-0.1
1,838,947	+		PP_1644	0.63	-2.1
1,838,948	-		PP_1644	0.64	-1.3
1,838,987	+		PP_1644	0.70	-1.4
1,839,043	-		PP_1644	0.79	-2.1
1,839,043	-		PP_1644	0.79	-1.7