Strain Fitness in Pseudomonas putida KT2440 around PP_1403

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
1,597,947	+		PP_1402	0.54	+0.3
1,597,948	-		PP_1402	0.54	+1.8
1,597,954	+		PP_1402	0.54	+1.3
1,597,955	-		PP_1402	0.54	+1.1
1,597,955	-		PP_1402	0.54	+0.4
1,597,958	-		PP_1402	0.54	+0.9
1,597,958	-		PP_1402	0.54	+0.1
1,598,025	-		PP_1402	0.58	+0.8
1,598,025	-		PP_1402	0.58	+0.6
1,598,025	-		PP_1402	0.58	-0.1
1,598,171	-		PP_1402	0.66	+0.3
1,598,310	+		PP_1402	0.74	+0.3
1,598,365	-		PP_1402	0.77	+0.4
1,598,379	+		PP_1402	0.78	+1.6
1,598,379	+		PP_1402	0.78	+0.6
1,598,379	+		PP_1402	0.78	+1.1
1,598,822	-				-1.0
1,598,822	-				-0.9
1,598,827	+				+1.7
1,598,828	-				-1.9
1,598,844	-				-1.4
1,598,941	-				-2.3
1,598,992	+				+1.0
1,598,992	+				-0.1
1,598,992	+				+1.5
1,599,121	+				+1.2
1,599,122	-		PP_1403	0.10	-1.7
1,599,122	-		PP_1403	0.10	-0.9
1,599,172	-		PP_1403	0.12	+0.4
1,599,247	+		PP_1403	0.15	+2.3
1,599,247	+		PP_1403	0.15	+1.6
1,599,248	-		PP_1403	0.16	-0.2
1,599,248	-		PP_1403	0.16	-0.9
1,599,248	-		PP_1403	0.16	+0.5
1,599,299	-		PP_1403	0.18	+0.2
1,599,299	-		PP_1403	0.18	+0.2
1,599,311	-		PP_1403	0.18	+0.6
1,599,311	-		PP_1403	0.18	+0.6
1,599,311	-		PP_1403	0.18	-0.2
1,599,311	-		PP_1403	0.18	-0.8
1,599,311	-		PP_1403	0.18	+0.0
1,599,361	+		PP_1403	0.20	+1.9
1,599,361	+		PP_1403	0.20	+0.7
1,599,361	+		PP_1403	0.20	-0.1
1,599,361	+		PP_1403	0.20	+0.7
1,599,362	-		PP_1403	0.21	+0.5
1,599,362	-		PP_1403	0.21	+1.4
1,599,364	+		PP_1403	0.21	+0.8
1,599,365	-		PP_1403	0.21	+1.3
1,599,398	+		PP_1403	0.22	+0.0
1,599,398	+		PP_1403	0.22	+1.3
1,599,398	+		PP_1403	0.22	+0.4
1,599,424	+		PP_1403	0.23	+0.6
1,599,425	-		PP_1403	0.23	+1.5
1,599,425	-		PP_1403	0.23	+1.2
1,599,699	+		PP_1403	0.35	+1.6
1,599,781	+		PP_1403	0.39	+1.5
1,599,826	+				-0.5
1,599,826	+		PP_1403	0.41	+1.2
1,599,827	-		PP_1403	0.41	+0.7
1,599,896	+		PP_1403	0.44	+1.5
1,599,896	+		PP_1403	0.44	+0.9
1,599,896	+		PP_1403	0.44	+0.9
1,600,070	-		PP_1403	0.51	+2.3
1,600,070	-		PP_1403	0.51	+1.4
1,600,070	-		PP_1403	0.51	+1.5
1,600,111	+		PP_1403	0.53	+1.1
1,600,112	-		PP_1403	0.53	+1.5
1,600,112	-		PP_1403	0.53	+1.3
1,600,236	-		PP_1403	0.59	+0.1
1,600,480	+		PP_1403	0.69	+0.7
1,600,481	-		PP_1403	0.69	+0.1
1,600,492	+		PP_1403	0.70	+0.9
1,600,492	+		PP_1403	0.70	+0.9
1,600,492	+		PP_1403	0.70	+1.7
1,600,502	-		PP_1403	0.70	+0.2
1,600,520	+		PP_1403	0.71	+1.1
1,600,520	+		PP_1403	0.71	+0.1
1,600,534	+		PP_1403	0.72	+0.6
1,600,561	+		PP_1403	0.73	+0.0
1,600,562	-		PP_1403	0.73	+2.3
1,600,562	-		PP_1403	0.73	+1.4
1,600,638	+		PP_1403	0.76	+1.5
1,600,638	+		PP_1403	0.76	+1.5
1,600,638	+		PP_1403	0.76	+0.8
1,600,639	-		PP_1403	0.76	+1.4
1,600,663	+		PP_1403	0.77	+1.4
1,600,663	+		PP_1403	0.77	+1.3
1,600,664	-		PP_1403	0.77	+0.8
1,600,954	+				+0.2
1,601,104	-				+1.5
1,601,104	-				+0.2
1,601,221	+				+2.0
1,601,222	-				-0.4
1,601,258	+				+0.8
1,601,259	-				-1.9
1,601,291	+				+1.2
1,601,291	+				+0.6
1,601,291	+				+1.2
1,601,301	+				+0.6
1,601,302	-				-2.7
1,601,343	+				+1.0
1,601,343	+				+0.4
1,601,344	-				-0.3
1,601,345	+				+1.3
1,601,345	+				+0.6
1,601,346	-				-1.3
1,601,346	-				-2.2
1,601,346	-				-1.3
1,601,346	-				-2.0
1,601,346	-				-3.1
1,601,388	+				+0.8
1,601,389	-				-1.8
1,601,389	-				-1.7
1,601,436	-		PP_1404	0.11	-1.8
1,601,481	+		PP_1404	0.18	+1.2
1,601,482	-		PP_1404	0.18	-0.5
1,601,487	+		PP_1404	0.19	+0.9
1,602,117	+				+0.1
1,602,117	+				-1.4
1,602,166	-				-0.4