Strain Fitness in Pseudomonas putida KT2440 around PP_0914

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
1,055,107	+		PP_0913	0.46	-0.2
1,055,107	+		PP_0913	0.46	+0.5
1,055,108	-		PP_0913	0.46	-0.2
1,055,239	+		PP_0913	0.55	+0.1
1,055,399	-		PP_0913	0.67	-0.3
1,055,399	-		PP_0913	0.67	-0.4
1,055,413	+		PP_0913	0.69	+1.4
1,055,413	+		PP_0913	0.69	+0.2
1,055,414	-		PP_0913	0.69	+0.0
1,055,509	+		PP_0913	0.76	+0.4
1,055,629	+		PP_0913	0.85	+0.9
1,055,630	-		PP_0913	0.85	-0.2
1,055,653	+		PP_0913	0.87	+0.0
1,055,653	+		PP_0913	0.87	+1.0
1,055,654	-		PP_0913	0.87	+0.3
1,055,654	-		PP_0913	0.87	-0.5
1,055,833	-				-1.3
1,055,954	+				-0.2
1,055,955	-				+1.3
1,056,066	+				+4.1
1,056,066	+				+4.6
1,056,108	+				+3.6
1,056,109	-				+3.4
1,056,109	-				+4.2
1,056,276	+		PP_0914	0.14	+5.2
1,056,422	+		PP_0914	0.21	+4.6
1,056,662	+		PP_0914	0.32	+4.4
1,056,674	+		PP_0914	0.33	+4.3
1,056,675	-		PP_0914	0.33	+4.0
1,056,699	+		PP_0914	0.34	+4.3
1,056,699	+		PP_0914	0.34	+4.0
1,056,717	+		PP_0914	0.35	+3.3
1,056,718	-		PP_0914	0.35	+3.8
1,056,718	-		PP_0914	0.35	+4.6
1,056,718	-		PP_0914	0.35	+4.3
1,056,811	-		PP_0914	0.39	+4.3
1,056,811	-		PP_0914	0.39	+3.2
1,056,811	-		PP_0914	0.39	+3.6
1,056,811	-		PP_0914	0.39	+4.0
1,056,811	-		PP_0914	0.39	+4.3
1,056,965	+		PP_0914	0.47	+3.5
1,056,966	-		PP_0914	0.47	+4.3
1,057,011	+		PP_0914	0.49	+3.4
1,057,011	+		PP_0914	0.49	+3.4
1,057,012	-		PP_0914	0.49	+4.2
1,057,012	-		PP_0914	0.49	+5.0
1,057,023	-		PP_0914	0.50	+5.5
1,057,098	-		PP_0914	0.53	+3.8
1,057,141	-		PP_0914	0.55	+4.8
1,057,160	-		PP_0914	0.56	+4.3
1,057,287	+		PP_0914	0.62	+4.8
1,057,288	-		PP_0914	0.62	+4.7
1,057,421	+		PP_0914	0.69	+3.6
1,057,422	-		PP_0914	0.69	+4.2
1,057,422	-		PP_0914	0.69	+4.7
1,057,507	-		PP_0914	0.73	+4.3
1,057,507	-		PP_0914	0.73	+3.8
1,057,557	-		PP_0914	0.75	+4.0
1,057,596	+		PP_0914	0.77	+4.5
1,057,596	+		PP_0914	0.77	+4.8
1,057,606	+		PP_0914	0.78	+4.9
1,057,607	-		PP_0914	0.78	+4.4
1,057,632	+		PP_0914	0.79	+3.7
1,057,636	-		PP_0914	0.79	+5.5
1,057,645	-		PP_0914	0.79	+5.2
1,057,674	+		PP_0914	0.81	+3.5
1,057,675	-		PP_0914	0.81	+4.3
1,057,675	-		PP_0914	0.81	+3.8
1,057,852	-		PP_0914	0.89	+4.2
1,057,930	-				+3.9
1,057,938	+				+4.2
1,057,938	+				+3.4
1,057,938	+				+3.3
1,057,939	-				+3.5
1,057,939	-				+3.8
1,057,939	-				+3.9
1,057,939	-				+4.5
1,057,939	-				+4.1
1,058,053	+				+3.3
1,058,095	+				+3.6
1,058,095	+				+4.1
1,058,095	+				+3.8
1,058,096	-				-0.6
1,058,096	-				-3.4
1,058,096	-				-1.7
1,058,096	-				-3.0
1,058,096	-				-0.2
1,058,114	+				+4.5
1,058,114	+				+4.3
1,058,122	+				+3.4
1,058,157	+				+4.4
1,058,157	+				+2.9
1,058,182	+				+3.3
1,058,183	-				-0.5
1,058,996	-				+0.5
1,059,015	-				+0.5
1,059,015	-				+0.6
1,059,031	+				+1.6
1,059,031	+				+0.4
1,059,038	+				+1.0
1,059,038	+				+0.6