Strain Fitness in Pseudomonas putida KT2440 around PP_0913

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
1,053,547	+		PP_0911	0.18	+0.6
1,053,582	+		PP_0911	0.27	+0.1
1,053,583	-		PP_0911	0.28	+0.3
1,053,602	-		PP_0911	0.33	+0.3
1,053,639	+		PP_0911	0.42	-0.2
1,053,639	+		PP_0911	0.42	-0.3
1,053,650	+		PP_0911	0.45	+1.2
1,053,651	-		PP_0911	0.45	-0.6
1,053,814	+		PP_0911	0.87	+0.4
1,053,814	+		PP_0911	0.87	-0.4
1,053,814	+		PP_0911	0.87	-0.2
1,053,814	+		PP_0911	0.87	-0.5
1,053,814	+		PP_0911	0.87	-1.2
1,053,815	-		PP_0911	0.88	+0.4
1,053,815	-		PP_0911	0.88	+0.2
1,053,815	-		PP_0911	0.88	-0.2
1,053,815	-		PP_0911	0.88	+0.8
1,053,815	-		PP_0911	0.88	+0.4
1,053,815	-		PP_0911	0.88	-0.5
1,053,817	-		PP_0911	0.88	+0.8
1,053,827	-				-0.9
1,053,846	+				-0.4
1,053,847	-				-0.5
1,053,847	-				+0.7
1,053,847	-				-0.2
1,053,847	-				+0.4
1,053,847	-				-1.1
1,053,847	-				+0.1
1,053,928	+				-0.8
1,053,928	+				+0.7
1,053,929	-				-1.3
1,054,058	-		PP_0912	0.31	-0.6
1,054,058	-		PP_0912	0.31	-1.1
1,054,058	-		PP_0912	0.31	+1.6
1,054,064	-		PP_0912	0.32	+0.1
1,054,064	-		PP_0912	0.32	+1.0
1,054,086	+		PP_0912	0.36	+0.2
1,054,087	-		PP_0912	0.36	+0.1
1,054,186	+		PP_0912	0.53	-0.4
1,054,187	-		PP_0912	0.53	+0.7
1,054,187	-		PP_0912	0.53	+0.3
1,054,192	+		PP_0912	0.54	+0.1
1,054,193	-		PP_0912	0.54	+0.8
1,054,193	-		PP_0912	0.54	-0.3
1,054,194	+		PP_0912	0.54	-0.5
1,054,195	-		PP_0912	0.54	-0.4
1,054,195	-		PP_0912	0.54	-0.4
1,054,270	+		PP_0912	0.67	+0.3
1,054,270	+		PP_0912	0.67	+0.8
1,054,271	-		PP_0912	0.67	-0.0
1,054,271	-		PP_0912	0.67	-1.3
1,054,371	+		PP_0912	0.84	-0.3
1,054,371	+		PP_0912	0.84	+0.8
1,054,371	+		PP_0912	0.84	-0.6
1,054,372	-		PP_0912	0.84	+1.1
1,054,389	+		PP_0912	0.87	+0.3
1,054,389	+		PP_0912	0.87	-0.7
1,054,389	+		PP_0912	0.87	-1.0
1,054,389	+		PP_0912	0.87	+0.8
1,054,491	-				-0.2
1,054,655	-		PP_0913	0.12	-1.5
1,054,680	+		PP_0913	0.14	-0.7
1,054,680	+		PP_0913	0.14	+0.2
1,054,680	+		PP_0913	0.14	+0.8
1,054,680	+		PP_0913	0.14	-0.4
1,054,681	-		PP_0913	0.14	+0.9
1,054,776	-		PP_0913	0.21	-0.5
1,055,107	+		PP_0913	0.46	-0.2
1,055,107	+		PP_0913	0.46	+0.5
1,055,108	-		PP_0913	0.46	-0.2
1,055,239	+		PP_0913	0.55	+0.1
1,055,399	-		PP_0913	0.67	-0.3
1,055,399	-		PP_0913	0.67	-0.4
1,055,413	+		PP_0913	0.69	+1.4
1,055,413	+		PP_0913	0.69	+0.2
1,055,414	-		PP_0913	0.69	+0.0
1,055,509	+		PP_0913	0.76	+0.4
1,055,629	+		PP_0913	0.85	+0.9
1,055,630	-		PP_0913	0.85	-0.2
1,055,653	+		PP_0913	0.87	+0.0
1,055,653	+		PP_0913	0.87	+1.0
1,055,654	-		PP_0913	0.87	+0.3
1,055,654	-		PP_0913	0.87	-0.5
1,055,833	-				-1.3
1,055,954	+				-0.2
1,055,955	-				+1.3
1,056,066	+				+4.1
1,056,066	+				+4.6
1,056,108	+				+3.6
1,056,109	-				+3.4
1,056,109	-				+4.2
1,056,276	+		PP_0914	0.14	+5.2
1,056,422	+		PP_0914	0.21	+4.6
1,056,662	+		PP_0914	0.32	+4.4
1,056,674	+		PP_0914	0.33	+4.3
1,056,675	-		PP_0914	0.33	+4.0
1,056,699	+		PP_0914	0.34	+4.3
1,056,699	+		PP_0914	0.34	+4.0
1,056,717	+		PP_0914	0.35	+3.3
1,056,718	-		PP_0914	0.35	+3.8
1,056,718	-		PP_0914	0.35	+4.6
1,056,718	-		PP_0914	0.35	+4.3
1,056,811	-		PP_0914	0.39	+4.3
1,056,811	-		PP_0914	0.39	+3.2
1,056,811	-		PP_0914	0.39	+3.6
1,056,811	-		PP_0914	0.39	+4.0
1,056,811	-		PP_0914	0.39	+4.3