Experiment: Geraniol 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0793 and PP_0794 are separated by 0 nucleotides PP_0794 and PP_0795 overlap by 4 nucleotides PP_0795 and PP_0796 are separated by 147 nucleotides PP_0796 and PP_0797 are separated by 72 nucleotides
PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345
_0793
PP_0794: PP_0794 - 1-phosphofructokinase monomer, at 912,346 to 913,293
_0794
PP_0795: PP_0795 - fructose PTS permease - IIBC component, at 913,290 to 915,032
_0795
PP_0796: PP_0796 - conserved protein of unknown function, at 915,180 to 915,467
_0796
PP_0797: PP_0797 - conserved protein of unknown function, at 915,540 to 916,079
_0797
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 912.387 kb on + strand at 912.510 kb on - strand, within PP_0794 at 912.621 kb on + strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.834 kb on - strand, within PP_0794 at 912.904 kb on - strand, within PP_0794 at 913.304 kb on - strand at 913.304 kb on - strand at 913.339 kb on + strand at 913.340 kb on - strand at 913.340 kb on - strand at 913.409 kb on + strand at 913.410 kb on - strand at 913.410 kb on - strand at 913.628 kb on + strand, within PP_0795 at 913.679 kb on - strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.686 kb on - strand, within PP_0795 at 913.840 kb on + strand, within PP_0795 at 913.868 kb on + strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.873 kb on - strand, within PP_0795 at 914.007 kb on + strand, within PP_0795 at 914.008 kb on - strand, within PP_0795 at 914.104 kb on - strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.191 kb on - strand, within PP_0795 at 914.378 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.425 kb on - strand, within PP_0795 at 914.425 kb on - strand, within PP_0795 at 914.425 kb on - strand, within PP_0795 at 914.498 kb on - strand, within PP_0795 at 914.608 kb on - strand, within PP_0795 at 914.808 kb on - strand, within PP_0795 at 914.970 kb on + strand at 914.970 kb on + strand at 914.971 kb on - strand at 914.971 kb on - strand at 914.971 kb on - strand at 914.971 kb on - strand at 915.028 kb on + strand at 915.028 kb on + strand at 915.028 kb on + strand at 915.097 kb on + strand at 915.098 kb on - strand at 915.213 kb on + strand, within PP_0796 at 915.214 kb on - strand, within PP_0796 at 915.214 kb on - strand, within PP_0796 at 915.214 kb on - strand, within PP_0796 at 915.311 kb on - strand, within PP_0796 at 915.311 kb on - strand, within PP_0796 at 915.347 kb on - strand, within PP_0796 at 915.347 kb on - strand, within PP_0796 at 915.378 kb on + strand, within PP_0796 at 915.379 kb on - strand, within PP_0796 at 915.379 kb on - strand, within PP_0796 at 915.379 kb on - strand, within PP_0796 at 915.436 kb on + strand, within PP_0796 at 915.580 kb on - strand at 915.634 kb on + strand, within PP_0797 at 915.654 kb on + strand, within PP_0797 at 915.655 kb on - strand, within PP_0797 at 915.655 kb on - strand, within PP_0797 at 915.813 kb on - strand, within PP_0797 at 915.933 kb on + strand, within PP_0797 at 915.965 kb on - strand, within PP_0797 at 915.990 kb on + strand, within PP_0797 at 915.990 kb on + strand, within PP_0797 at 915.990 kb on + strand, within PP_0797 at 915.991 kb on - strand, within PP_0797 at 915.991 kb on - strand, within PP_0797 at 915.991 kb on - strand, within PP_0797 at 915.991 kb on - strand, within PP_0797
Per-strain Table
Position Strand Gene LocusTag Fraction Geraniol 1 vol% remove 912,387 + -0.2 912,510 - PP_0794 0.17 +0.6 912,621 + PP_0794 0.29 -0.7 912,622 - PP_0794 0.29 -0.1 912,622 - PP_0794 0.29 -0.2 912,833 + PP_0794 0.51 +0.7 912,833 + PP_0794 0.51 +0.4 912,834 - PP_0794 0.51 +2.8 912,904 - PP_0794 0.59 +0.2 913,304 - -0.2 913,304 - -0.1 913,339 + +0.2 913,340 - -0.7 913,340 - +0.7 913,409 + +0.2 913,410 - +0.0 913,410 - +0.1 913,628 + PP_0795 0.19 +0.8 913,679 - PP_0795 0.22 -0.9 913,685 + PP_0795 0.23 +0.2 913,685 + PP_0795 0.23 -0.2 913,686 - PP_0795 0.23 +1.7 913,840 + PP_0795 0.32 +1.1 913,868 + PP_0795 0.33 +0.5 913,869 - PP_0795 0.33 +0.4 913,869 - PP_0795 0.33 +0.7 913,869 - PP_0795 0.33 +0.5 913,872 + PP_0795 0.33 +0.2 913,872 + PP_0795 0.33 +0.3 913,873 - PP_0795 0.33 +0.7 914,007 + PP_0795 0.41 -0.2 914,008 - PP_0795 0.41 -0.2 914,104 - PP_0795 0.47 +1.8 914,190 + PP_0795 0.52 -0.0 914,190 + PP_0795 0.52 +0.3 914,190 + PP_0795 0.52 -0.0 914,191 - PP_0795 0.52 +0.2 914,378 + PP_0795 0.62 +1.0 914,424 + PP_0795 0.65 +0.1 914,424 + PP_0795 0.65 -1.2 914,424 + PP_0795 0.65 -0.1 914,424 + PP_0795 0.65 +0.3 914,425 - PP_0795 0.65 +0.1 914,425 - PP_0795 0.65 -0.4 914,425 - PP_0795 0.65 -0.7 914,498 - PP_0795 0.69 -0.5 914,608 - PP_0795 0.76 +0.2 914,808 - PP_0795 0.87 -0.5 914,970 + +0.4 914,970 + -1.0 914,971 - +0.6 914,971 - +0.3 914,971 - -0.7 914,971 - -0.5 915,028 + +0.4 915,028 + +0.2 915,028 + -0.6 915,097 + +0.0 915,098 - -0.7 915,213 + PP_0796 0.11 +1.0 915,214 - PP_0796 0.12 +0.3 915,214 - PP_0796 0.12 -0.6 915,214 - PP_0796 0.12 -0.4 915,311 - PP_0796 0.45 +0.6 915,311 - PP_0796 0.45 +1.3 915,347 - PP_0796 0.58 -1.9 915,347 - PP_0796 0.58 -0.4 915,378 + PP_0796 0.69 -0.0 915,379 - PP_0796 0.69 -0.7 915,379 - PP_0796 0.69 -0.1 915,379 - PP_0796 0.69 -1.0 915,436 + PP_0796 0.89 -0.2 915,580 - -1.1 915,634 + PP_0797 0.17 +0.4 915,654 + PP_0797 0.21 +0.4 915,655 - PP_0797 0.21 +0.3 915,655 - PP_0797 0.21 -0.1 915,813 - PP_0797 0.51 -0.6 915,933 + PP_0797 0.73 -0.6 915,965 - PP_0797 0.79 -1.6 915,990 + PP_0797 0.83 -0.6 915,990 + PP_0797 0.83 -0.3 915,990 + PP_0797 0.83 -0.1 915,991 - PP_0797 0.84 +1.8 915,991 - PP_0797 0.84 +0.3 915,991 - PP_0797 0.84 +0.1 915,991 - PP_0797 0.84 -2.0
Or see this region's nucleotide sequence