Experiment: Geraniol 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0287 and PP_0288 are separated by 268 nucleotides PP_0288 and PP_0289 are separated by 179 nucleotides PP_0289 and PP_0290 are separated by 0 nucleotides
PP_0287: PP_0287 - conserved exported protein of unknown function, at 345,599 to 347,845
_0287
PP_0288: PP_0288 - putative Oxalate/formate antiporter, at 348,114 to 349,775
_0288
PP_0289: PP_0289 - Imidazoleglycerol-phosphate dehydratase, at 349,955 to 350,587
_0289
PP_0290: PP_0290 - Imidazole glycerol phosphate synthase subunit HisH, at 350,588 to 351,226
_0290
Position (kb)
348
349
350 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 347.121 kb on + strand, within PP_0287 at 347.121 kb on + strand, within PP_0287 at 347.122 kb on - strand, within PP_0287 at 347.201 kb on - strand, within PP_0287 at 347.277 kb on + strand, within PP_0287 at 347.277 kb on + strand, within PP_0287 at 347.277 kb on + strand, within PP_0287 at 347.277 kb on + strand, within PP_0287 at 347.278 kb on - strand, within PP_0287 at 347.278 kb on - strand, within PP_0287 at 347.278 kb on - strand, within PP_0287 at 347.305 kb on - strand, within PP_0287 at 347.519 kb on + strand, within PP_0287 at 347.519 kb on + strand, within PP_0287 at 347.520 kb on - strand, within PP_0287 at 347.520 kb on - strand, within PP_0287 at 347.520 kb on - strand, within PP_0287 at 347.743 kb on - strand at 347.860 kb on - strand at 347.888 kb on + strand at 347.889 kb on - strand at 347.889 kb on - strand at 347.889 kb on - strand at 347.890 kb on + strand at 347.890 kb on + strand at 347.891 kb on - strand at 347.891 kb on - strand at 347.891 kb on - strand at 347.917 kb on + strand at 347.918 kb on - strand at 347.918 kb on - strand at 347.924 kb on - strand at 347.931 kb on + strand at 347.932 kb on - strand at 347.932 kb on - strand at 347.943 kb on - strand at 347.950 kb on + strand at 347.961 kb on - strand at 347.961 kb on - strand at 347.961 kb on - strand at 347.977 kb on + strand at 347.977 kb on + strand at 347.977 kb on + strand at 347.977 kb on + strand at 347.977 kb on + strand at 347.977 kb on + strand at 347.978 kb on - strand at 347.978 kb on - strand at 347.980 kb on + strand at 347.980 kb on + strand at 347.981 kb on - strand at 348.021 kb on - strand at 348.096 kb on - strand at 348.096 kb on - strand at 348.096 kb on - strand at 348.179 kb on - strand at 348.256 kb on - strand at 348.396 kb on + strand, within PP_0288 at 348.396 kb on + strand, within PP_0288 at 348.396 kb on + strand, within PP_0288 at 348.396 kb on + strand, within PP_0288 at 348.396 kb on + strand, within PP_0288 at 348.396 kb on + strand, within PP_0288 at 348.396 kb on + strand, within PP_0288 at 348.396 kb on + strand, within PP_0288 at 348.397 kb on - strand, within PP_0288 at 348.397 kb on - strand, within PP_0288 at 348.397 kb on - strand, within PP_0288 at 348.397 kb on - strand, within PP_0288 at 348.397 kb on - strand, within PP_0288 at 348.397 kb on - strand, within PP_0288 at 348.397 kb on - strand, within PP_0288 at 348.398 kb on + strand, within PP_0288 at 348.526 kb on + strand, within PP_0288 at 348.527 kb on - strand, within PP_0288 at 348.603 kb on + strand, within PP_0288 at 348.603 kb on + strand, within PP_0288 at 348.603 kb on + strand, within PP_0288 at 348.604 kb on - strand, within PP_0288 at 348.725 kb on + strand, within PP_0288 at 348.793 kb on - strand, within PP_0288 at 348.833 kb on - strand, within PP_0288 at 348.953 kb on + strand, within PP_0288 at 348.954 kb on - strand, within PP_0288 at 349.046 kb on - strand, within PP_0288 at 349.182 kb on + strand, within PP_0288 at 349.183 kb on - strand, within PP_0288 at 349.183 kb on - strand, within PP_0288 at 349.183 kb on - strand, within PP_0288 at 349.203 kb on + strand, within PP_0288 at 349.203 kb on + strand, within PP_0288 at 349.204 kb on - strand, within PP_0288 at 349.204 kb on - strand, within PP_0288 at 349.204 kb on - strand, within PP_0288 at 349.204 kb on - strand, within PP_0288 at 349.236 kb on + strand, within PP_0288 at 349.236 kb on + strand, within PP_0288 at 349.236 kb on + strand, within PP_0288 at 349.236 kb on + strand, within PP_0288 at 349.236 kb on + strand, within PP_0288 at 349.236 kb on + strand, within PP_0288 at 349.236 kb on + strand, within PP_0288 at 349.237 kb on - strand, within PP_0288 at 349.237 kb on - strand, within PP_0288 at 349.237 kb on - strand, within PP_0288 at 349.237 kb on - strand, within PP_0288 at 349.306 kb on + strand, within PP_0288 at 349.306 kb on + strand, within PP_0288 at 349.306 kb on + strand, within PP_0288 at 349.314 kb on + strand, within PP_0288 at 349.314 kb on + strand, within PP_0288 at 349.314 kb on + strand, within PP_0288 at 349.314 kb on + strand, within PP_0288 at 349.315 kb on - strand, within PP_0288 at 349.315 kb on - strand, within PP_0288 at 349.446 kb on + strand, within PP_0288 at 349.447 kb on - strand, within PP_0288 at 349.458 kb on + strand, within PP_0288 at 349.494 kb on + strand, within PP_0288 at 349.495 kb on - strand, within PP_0288 at 349.495 kb on - strand, within PP_0288 at 349.509 kb on + strand, within PP_0288 at 349.509 kb on + strand, within PP_0288 at 349.509 kb on + strand, within PP_0288 at 349.509 kb on + strand, within PP_0288 at 349.509 kb on + strand, within PP_0288 at 349.509 kb on + strand, within PP_0288 at 349.510 kb on - strand, within PP_0288 at 349.510 kb on - strand, within PP_0288 at 349.510 kb on - strand, within PP_0288 at 349.542 kb on - strand, within PP_0288 at 349.542 kb on - strand, within PP_0288 at 349.779 kb on - strand at 349.779 kb on - strand at 349.779 kb on - strand at 349.857 kb on + strand at 349.867 kb on + strand at 349.867 kb on + strand at 349.867 kb on + strand at 349.868 kb on - strand at 349.868 kb on - strand at 349.914 kb on + strand at 349.914 kb on + strand at 349.914 kb on + strand at 349.914 kb on + strand at 349.951 kb on + strand at 349.951 kb on + strand at 349.951 kb on + strand at 349.952 kb on - strand at 349.953 kb on + strand at 349.953 kb on + strand at 349.954 kb on - strand at 350.005 kb on + strand at 350.005 kb on + strand at 350.006 kb on - strand at 350.006 kb on - strand at 350.090 kb on - strand, within PP_0289 at 350.174 kb on - strand, within PP_0289 at 350.174 kb on - strand, within PP_0289 at 350.174 kb on - strand, within PP_0289 at 350.260 kb on + strand, within PP_0289 at 350.260 kb on + strand, within PP_0289 at 350.271 kb on - strand, within PP_0289 at 350.282 kb on + strand, within PP_0289 at 350.282 kb on + strand, within PP_0289 at 350.282 kb on + strand, within PP_0289 at 350.283 kb on - strand, within PP_0289 at 350.355 kb on + strand, within PP_0289 at 350.356 kb on - strand, within PP_0289 at 350.356 kb on - strand, within PP_0289 at 350.356 kb on - strand, within PP_0289 at 350.360 kb on + strand, within PP_0289 at 350.360 kb on + strand, within PP_0289 at 350.361 kb on - strand, within PP_0289 at 350.361 kb on - strand, within PP_0289 at 350.361 kb on - strand, within PP_0289 at 350.361 kb on - strand, within PP_0289 at 350.449 kb on + strand, within PP_0289 at 350.449 kb on + strand, within PP_0289 at 350.548 kb on + strand at 350.548 kb on + strand at 350.548 kb on + strand at 350.549 kb on - strand at 350.585 kb on + strand at 350.612 kb on + strand at 350.658 kb on + strand, within PP_0290 at 350.658 kb on + strand, within PP_0290 at 350.659 kb on - strand, within PP_0290 at 350.659 kb on - strand, within PP_0290 at 350.668 kb on + strand, within PP_0290 at 350.680 kb on + strand, within PP_0290
Per-strain Table
Position Strand Gene LocusTag Fraction Geraniol 1 vol% remove 347,121 + PP_0287 0.68 -0.3 347,121 + PP_0287 0.68 -0.9 347,122 - PP_0287 0.68 +0.1 347,201 - PP_0287 0.71 -0.2 347,277 + PP_0287 0.75 +1.4 347,277 + PP_0287 0.75 +1.3 347,277 + PP_0287 0.75 -1.0 347,277 + PP_0287 0.75 +0.9 347,278 - PP_0287 0.75 +1.0 347,278 - PP_0287 0.75 +0.2 347,278 - PP_0287 0.75 -0.3 347,305 - PP_0287 0.76 -0.1 347,519 + PP_0287 0.85 +1.6 347,519 + PP_0287 0.85 -0.4 347,520 - PP_0287 0.85 -0.5 347,520 - PP_0287 0.85 -0.5 347,520 - PP_0287 0.85 -0.3 347,743 - -1.6 347,860 - -0.1 347,888 + +0.8 347,889 - -0.3 347,889 - +0.6 347,889 - +0.3 347,890 + +0.5 347,890 + +1.0 347,891 - -0.3 347,891 - -0.1 347,891 - -1.4 347,917 + +0.5 347,918 - -0.4 347,918 - -1.1 347,924 - -1.7 347,931 + +0.2 347,932 - +0.1 347,932 - -0.6 347,943 - +0.2 347,950 + +1.7 347,961 - -0.8 347,961 - -0.1 347,961 - -0.5 347,977 + +1.2 347,977 + +1.0 347,977 + +0.8 347,977 + +1.4 347,977 + +1.2 347,977 + +1.1 347,978 - +0.3 347,978 - +0.8 347,980 + +0.9 347,980 + +0.9 347,981 - -0.2 348,021 - +0.7 348,096 - -1.1 348,096 - -0.5 348,096 - +1.3 348,179 - -2.7 348,256 - +1.2 348,396 + PP_0288 0.17 -1.2 348,396 + PP_0288 0.17 -2.8 348,396 + PP_0288 0.17 +0.2 348,396 + PP_0288 0.17 +0.3 348,396 + PP_0288 0.17 -0.6 348,396 + PP_0288 0.17 +0.1 348,396 + PP_0288 0.17 -1.3 348,396 + PP_0288 0.17 +0.5 348,397 - PP_0288 0.17 +0.2 348,397 - PP_0288 0.17 -0.1 348,397 - PP_0288 0.17 +0.3 348,397 - PP_0288 0.17 -0.2 348,397 - PP_0288 0.17 -0.1 348,397 - PP_0288 0.17 -0.7 348,397 - PP_0288 0.17 -0.5 348,398 + PP_0288 0.17 -0.8 348,526 + PP_0288 0.25 -0.2 348,527 - PP_0288 0.25 -0.6 348,603 + PP_0288 0.29 -0.8 348,603 + PP_0288 0.29 -0.9 348,603 + PP_0288 0.29 -0.2 348,604 - PP_0288 0.29 -0.2 348,725 + PP_0288 0.37 -1.2 348,793 - PP_0288 0.41 -0.4 348,833 - PP_0288 0.43 -0.8 348,953 + PP_0288 0.50 +0.3 348,954 - PP_0288 0.51 -0.7 349,046 - PP_0288 0.56 -1.0 349,182 + PP_0288 0.64 -0.2 349,183 - PP_0288 0.64 +0.1 349,183 - PP_0288 0.64 -0.4 349,183 - PP_0288 0.64 -0.6 349,203 + PP_0288 0.66 -0.7 349,203 + PP_0288 0.66 -0.7 349,204 - PP_0288 0.66 -1.8 349,204 - PP_0288 0.66 -1.1 349,204 - PP_0288 0.66 +0.2 349,204 - PP_0288 0.66 +0.3 349,236 + PP_0288 0.68 -1.8 349,236 + PP_0288 0.68 -0.7 349,236 + PP_0288 0.68 -0.6 349,236 + PP_0288 0.68 -0.2 349,236 + PP_0288 0.68 -0.8 349,236 + PP_0288 0.68 -0.9 349,236 + PP_0288 0.68 -0.9 349,237 - PP_0288 0.68 -1.0 349,237 - PP_0288 0.68 -0.1 349,237 - PP_0288 0.68 -0.9 349,237 - PP_0288 0.68 -0.7 349,306 + PP_0288 0.72 +0.5 349,306 + PP_0288 0.72 +0.2 349,306 + PP_0288 0.72 +0.1 349,314 + PP_0288 0.72 -0.4 349,314 + PP_0288 0.72 +0.3 349,314 + PP_0288 0.72 -0.6 349,314 + PP_0288 0.72 -2.0 349,315 - PP_0288 0.72 -0.2 349,315 - PP_0288 0.72 -0.3 349,446 + PP_0288 0.80 -1.0 349,447 - PP_0288 0.80 -0.8 349,458 + PP_0288 0.81 -0.4 349,494 + PP_0288 0.83 -1.0 349,495 - PP_0288 0.83 -0.5 349,495 - PP_0288 0.83 -0.2 349,509 + PP_0288 0.84 -2.2 349,509 + PP_0288 0.84 -1.4 349,509 + PP_0288 0.84 -0.8 349,509 + PP_0288 0.84 +0.7 349,509 + PP_0288 0.84 -0.8 349,509 + PP_0288 0.84 +0.3 349,510 - PP_0288 0.84 -0.7 349,510 - PP_0288 0.84 -0.1 349,510 - PP_0288 0.84 +0.4 349,542 - PP_0288 0.86 -0.8 349,542 - PP_0288 0.86 +0.2 349,779 - +0.4 349,779 - -1.7 349,779 - -0.2 349,857 + +0.9 349,867 + +0.0 349,867 + -0.2 349,867 + +0.9 349,868 - -1.2 349,868 - -0.3 349,914 + -0.5 349,914 + -0.1 349,914 + -0.2 349,914 + -0.8 349,951 + -0.1 349,951 + -0.4 349,951 + -0.1 349,952 - -1.1 349,953 + +0.2 349,953 + +0.1 349,954 - +1.1 350,005 + -0.1 350,005 + -0.4 350,006 - +0.5 350,006 - +0.8 350,090 - PP_0289 0.21 +0.6 350,174 - PP_0289 0.35 +1.2 350,174 - PP_0289 0.35 +0.9 350,174 - PP_0289 0.35 +1.0 350,260 + PP_0289 0.48 +0.1 350,260 + PP_0289 0.48 +1.3 350,271 - PP_0289 0.50 +1.2 350,282 + PP_0289 0.52 -0.3 350,282 + PP_0289 0.52 -1.4 350,282 + PP_0289 0.52 -0.5 350,283 - PP_0289 0.52 +0.6 350,355 + PP_0289 0.63 +0.3 350,356 - PP_0289 0.63 +0.3 350,356 - PP_0289 0.63 +1.0 350,356 - PP_0289 0.63 +0.3 350,360 + PP_0289 0.64 +0.2 350,360 + PP_0289 0.64 +1.1 350,361 - PP_0289 0.64 +0.6 350,361 - PP_0289 0.64 +1.0 350,361 - PP_0289 0.64 +0.5 350,361 - PP_0289 0.64 +0.5 350,449 + PP_0289 0.78 -0.5 350,449 + PP_0289 0.78 +0.6 350,548 + -1.1 350,548 + +1.7 350,548 + -0.2 350,549 - +1.3 350,585 + +0.7 350,612 + +0.7 350,658 + PP_0290 0.11 +1.6 350,658 + PP_0290 0.11 +1.1 350,659 - PP_0290 0.11 -0.3 350,659 - PP_0290 0.11 +0.3 350,668 + PP_0290 0.13 +1.1 350,680 + PP_0290 0.14 +1.5
Or see this region's nucleotide sequence