Strain Fitness in Pseudomonas putida KT2440 around PP_0281

Experiment: Geraniol 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0279 and PP_0280 are separated by 128 nucleotidesPP_0280 and PP_0281 overlap by 1 nucleotidesPP_0281 and PP_0282 are separated by 54 nucleotidesPP_0282 and PP_0283 are separated by 11 nucleotides PP_0279: PP_0279 - conserved protein of unknown function, at 336,545 to 337,750 _0279 PP_0280: PP_0280 - Amino acid ABC transporter, permease protein, at 337,879 to 338,568 _0280 PP_0281: PP_0281 - Amino acid ABC transporter, permease protein, at 338,568 to 339,260 _0281 PP_0282: PP_0282 - L-arginine ABC transporter - periplasmic binding subunit, at 339,315 to 340,067 _0282 PP_0283: PP_0283 - Arginine/ornithine transport ATP-binding protein AotP, at 340,079 to 340,852 _0283 Position (kb) 338 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.808 kb on + strandat 337.809 kb on - strandat 337.809 kb on - strandat 337.810 kb on + strandat 337.811 kb on - strandat 337.811 kb on - strandat 337.834 kb on + strandat 337.835 kb on - strandat 337.961 kb on + strand, within PP_0280at 337.961 kb on + strand, within PP_0280at 337.962 kb on - strand, within PP_0280at 337.962 kb on - strand, within PP_0280at 338.000 kb on + strand, within PP_0280at 338.001 kb on - strand, within PP_0280at 338.020 kb on - strand, within PP_0280at 338.056 kb on - strand, within PP_0280at 338.144 kb on + strand, within PP_0280at 338.144 kb on + strand, within PP_0280at 338.202 kb on + strand, within PP_0280at 338.202 kb on + strand, within PP_0280at 338.243 kb on + strand, within PP_0280at 338.243 kb on + strand, within PP_0280at 338.244 kb on - strand, within PP_0280at 338.244 kb on - strand, within PP_0280at 338.300 kb on + strand, within PP_0280at 338.351 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.426 kb on + strand, within PP_0280at 338.569 kb on + strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.619 kb on - strandat 338.650 kb on + strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.906 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.097 kb on + strand, within PP_0281at 339.255 kb on - strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.338 kb on - strandat 339.338 kb on - strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.359 kb on - strandat 339.362 kb on + strandat 339.363 kb on - strandat 339.514 kb on + strand, within PP_0282at 339.514 kb on + strand, within PP_0282at 339.515 kb on - strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.548 kb on + strand, within PP_0282at 339.571 kb on + strand, within PP_0282at 339.593 kb on - strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.631 kb on + strand, within PP_0282at 339.632 kb on - strand, within PP_0282at 339.671 kb on + strand, within PP_0282at 339.671 kb on + strand, within PP_0282at 339.672 kb on - strand, within PP_0282at 339.742 kb on + strand, within PP_0282at 339.742 kb on + strand, within PP_0282at 339.743 kb on - strand, within PP_0282at 339.743 kb on - strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.745 kb on + strand, within PP_0282at 339.746 kb on - strand, within PP_0282at 339.860 kb on + strand, within PP_0282at 340.057 kb on + strandat 340.058 kb on - strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.069 kb on + strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.070 kb on - strandat 340.240 kb on + strand, within PP_0283

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Per-strain Table

Position Strand Gene LocusTag Fraction Geraniol 1 vol%
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337,721 + -0.4
337,721 + -0.2
337,721 + +0.1
337,721 + -0.3
337,721 + -0.6
337,721 + +1.0
337,721 + +0.2
337,721 + -0.2
337,722 - +1.5
337,722 - +0.0
337,722 - -0.1
337,722 - +0.2
337,808 + +0.4
337,809 - +0.6
337,809 - -0.4
337,810 + -0.9
337,811 - +2.4
337,811 - -1.0
337,834 + +0.8
337,835 - -1.3
337,961 + PP_0280 0.12 +0.4
337,961 + PP_0280 0.12 -0.4
337,962 - PP_0280 0.12 +0.1
337,962 - PP_0280 0.12 -1.2
338,000 + PP_0280 0.18 -2.0
338,001 - PP_0280 0.18 -0.9
338,020 - PP_0280 0.20 +0.7
338,056 - PP_0280 0.26 -1.4
338,144 + PP_0280 0.38 -1.2
338,144 + PP_0280 0.38 -0.6
338,202 + PP_0280 0.47 -1.2
338,202 + PP_0280 0.47 -1.1
338,243 + PP_0280 0.53 -1.7
338,243 + PP_0280 0.53 +0.5
338,244 - PP_0280 0.53 -0.5
338,244 - PP_0280 0.53 -0.4
338,300 + PP_0280 0.61 +0.0
338,351 + PP_0280 0.68 -0.1
338,402 + PP_0280 0.76 +0.6
338,402 + PP_0280 0.76 -1.3
338,426 + PP_0280 0.79 -0.5
338,569 + -0.5
338,570 - -0.9
338,570 - -1.3
338,570 - -0.9
338,619 - -0.7
338,650 + PP_0281 0.12 -0.6
338,651 - PP_0281 0.12 +1.0
338,651 - PP_0281 0.12 -0.0
338,651 - PP_0281 0.12 -1.0
338,651 - PP_0281 0.12 -2.3
338,671 + PP_0281 0.15 -0.5
338,671 + PP_0281 0.15 -0.4
338,672 - PP_0281 0.15 -0.9
338,672 - PP_0281 0.15 -0.3
338,672 - PP_0281 0.15 -0.5
338,906 + PP_0281 0.49 -0.3
339,046 + PP_0281 0.69 -0.3
339,046 + PP_0281 0.69 -0.6
339,047 - PP_0281 0.69 -0.5
339,047 - PP_0281 0.69 -2.2
339,047 - PP_0281 0.69 +1.1
339,050 + PP_0281 0.70 -1.7
339,050 + PP_0281 0.70 -0.6
339,050 + PP_0281 0.70 -0.2
339,051 - PP_0281 0.70 -1.2
339,051 - PP_0281 0.70 -0.2
339,051 - PP_0281 0.70 -0.9
339,051 - PP_0281 0.70 -0.5
339,051 - PP_0281 0.70 +0.5
339,051 - PP_0281 0.70 -2.1
339,051 - PP_0281 0.70 -0.7
339,058 - PP_0281 0.71 +1.4
339,058 - PP_0281 0.71 -1.0
339,097 + PP_0281 0.76 -1.1
339,255 - -0.2
339,337 + -0.6
339,337 + +0.0
339,337 + -0.3
339,337 + +0.9
339,338 - -0.6
339,338 - -0.6
339,358 + -0.3
339,358 + -0.4
339,358 + -0.8
339,358 + -1.9
339,359 - +0.4
339,362 + -0.1
339,363 - -2.3
339,514 + PP_0282 0.26 -0.8
339,514 + PP_0282 0.26 -2.6
339,515 - PP_0282 0.27 -0.6
339,523 + PP_0282 0.28 +0.1
339,523 + PP_0282 0.28 +0.4
339,523 + PP_0282 0.28 -2.5
339,524 - PP_0282 0.28 -0.6
339,524 - PP_0282 0.28 -1.2
339,524 - PP_0282 0.28 -0.1
339,524 - PP_0282 0.28 +0.1
339,524 - PP_0282 0.28 -0.7
339,548 + PP_0282 0.31 -1.8
339,571 + PP_0282 0.34 -0.9
339,593 - PP_0282 0.37 -2.9
339,631 + PP_0282 0.42 -0.9
339,631 + PP_0282 0.42 -2.1
339,631 + PP_0282 0.42 -2.6
339,631 + PP_0282 0.42 +0.2
339,631 + PP_0282 0.42 -0.1
339,632 - PP_0282 0.42 -2.2
339,671 + PP_0282 0.47 -0.5
339,671 + PP_0282 0.47 -0.7
339,672 - PP_0282 0.47 -1.6
339,742 + PP_0282 0.57 +0.0
339,742 + PP_0282 0.57 -0.8
339,743 - PP_0282 0.57 -1.1
339,743 - PP_0282 0.57 -2.3
339,745 + PP_0282 0.57 -1.6
339,745 + PP_0282 0.57 -1.6
339,745 + PP_0282 0.57 -1.2
339,746 - PP_0282 0.57 -0.3
339,860 + PP_0282 0.72 -0.9
340,057 + -0.8
340,058 - -0.1
340,069 + -1.5
340,069 + -1.4
340,069 + -1.6
340,069 + -2.4
340,070 - -0.9
340,070 - +0.4
340,070 - -0.7
340,070 - -1.5
340,070 - -1.1
340,070 - +0.0
340,070 - -1.3
340,240 + PP_0283 0.21 -1.1

Or see this region's nucleotide sequence