Strain Fitness in Pseudomonas putida KT2440 around PP_0204

Experiment: Geraniol 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0203 and PP_t74 are separated by 162 nucleotidesPP_t74 and PP_0204 are separated by 213 nucleotidesPP_0204 and PP_0205 overlap by 4 nucleotides PP_0203: PP_0203 - putative dipeptidase, at 253,386 to 255,116 _0203 PP_t74: PP_t74 - tRNA-Arg, at 255,279 to 255,355 _t74 PP_0204: PP_0204 - Transcriptional regulator, GntR family, at 255,569 to 256,318 _0204 PP_0205: PP_0205 - putative Oxidoreductase, at 256,315 to 258,039 _0205 Position (kb) 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 254.657 kb on - strand, within PP_0203at 254.657 kb on - strand, within PP_0203at 254.750 kb on - strand, within PP_0203at 254.824 kb on + strand, within PP_0203at 254.824 kb on + strand, within PP_0203at 254.838 kb on - strand, within PP_0203at 254.839 kb on + strand, within PP_0203at 254.840 kb on - strand, within PP_0203at 254.903 kb on - strand, within PP_0203at 254.903 kb on - strand, within PP_0203at 255.059 kb on + strandat 255.060 kb on - strandat 255.060 kb on - strandat 255.278 kb on - strandat 255.278 kb on - strandat 255.372 kb on - strandat 255.477 kb on - strandat 255.507 kb on + strandat 255.517 kb on - strandat 255.517 kb on - strandat 255.539 kb on + strandat 255.598 kb on - strandat 255.605 kb on + strandat 255.605 kb on + strandat 255.605 kb on + strandat 255.606 kb on - strandat 255.606 kb on - strandat 255.607 kb on + strandat 255.628 kb on - strandat 255.649 kb on + strand, within PP_0204at 255.653 kb on + strand, within PP_0204at 255.654 kb on - strand, within PP_0204at 255.654 kb on - strand, within PP_0204at 255.654 kb on - strand, within PP_0204at 255.664 kb on + strand, within PP_0204at 255.665 kb on - strand, within PP_0204at 255.665 kb on - strand, within PP_0204at 255.823 kb on + strand, within PP_0204at 255.946 kb on + strand, within PP_0204at 255.947 kb on - strand, within PP_0204at 255.947 kb on - strand, within PP_0204at 256.253 kb on + strandat 256.253 kb on + strandat 256.254 kb on - strandat 256.254 kb on - strandat 256.272 kb on + strandat 256.336 kb on + strandat 256.337 kb on - strandat 256.337 kb on - strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.461 kb on + strandat 256.462 kb on - strandat 256.462 kb on - strandat 256.464 kb on + strandat 256.464 kb on + strandat 256.464 kb on + strandat 256.465 kb on - strandat 256.523 kb on - strand, within PP_0205at 256.523 kb on - strand, within PP_0205at 256.582 kb on + strand, within PP_0205at 256.582 kb on + strand, within PP_0205at 256.582 kb on + strand, within PP_0205at 256.583 kb on - strand, within PP_0205at 256.583 kb on - strand, within PP_0205at 256.739 kb on - strand, within PP_0205at 256.739 kb on - strand, within PP_0205at 256.934 kb on - strand, within PP_0205at 256.978 kb on + strand, within PP_0205at 256.979 kb on - strand, within PP_0205at 256.991 kb on - strand, within PP_0205at 256.991 kb on - strand, within PP_0205at 257.053 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.074 kb on + strand, within PP_0205at 257.099 kb on - strand, within PP_0205at 257.141 kb on - strand, within PP_0205

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Per-strain Table

Position Strand Gene LocusTag Fraction Geraniol 1 vol%
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254,657 - PP_0203 0.73 +1.0
254,657 - PP_0203 0.73 +1.0
254,750 - PP_0203 0.79 -0.1
254,824 + PP_0203 0.83 -0.2
254,824 + PP_0203 0.83 +1.2
254,838 - PP_0203 0.84 +0.2
254,839 + PP_0203 0.84 +0.0
254,840 - PP_0203 0.84 -0.5
254,903 - PP_0203 0.88 +0.3
254,903 - PP_0203 0.88 +0.3
255,059 + +0.3
255,060 - +0.4
255,060 - +0.8
255,278 - +2.9
255,278 - +1.4
255,372 - +1.6
255,477 - +0.4
255,507 + +1.3
255,517 - +0.6
255,517 - +0.2
255,539 + +1.5
255,598 - +1.2
255,605 + -0.6
255,605 + +1.4
255,605 + +1.3
255,606 - -0.1
255,606 - +0.2
255,607 + +1.6
255,628 - -0.5
255,649 + PP_0204 0.11 +1.6
255,653 + PP_0204 0.11 +1.1
255,654 - PP_0204 0.11 -0.2
255,654 - PP_0204 0.11 +1.6
255,654 - PP_0204 0.11 -0.2
255,664 + PP_0204 0.13 +1.6
255,665 - PP_0204 0.13 +0.6
255,665 - PP_0204 0.13 +2.0
255,823 + PP_0204 0.34 +1.0
255,946 + PP_0204 0.50 -0.8
255,947 - PP_0204 0.50 -0.0
255,947 - PP_0204 0.50 +0.5
256,253 + +1.0
256,253 + +0.2
256,254 - +0.6
256,254 - -2.1
256,272 + +0.8
256,336 + -0.6
256,337 - +1.3
256,337 - +1.4
256,461 + +0.6
256,461 + -0.1
256,461 + +0.2
256,461 + +0.1
256,461 + +0.7
256,461 + +0.1
256,461 + -0.5
256,461 + -0.4
256,461 + -0.1
256,462 - +0.3
256,462 - +0.7
256,464 + -3.2
256,464 + -0.1
256,464 + -0.2
256,465 - -0.9
256,523 - PP_0205 0.12 -0.7
256,523 - PP_0205 0.12 -0.1
256,582 + PP_0205 0.15 -0.7
256,582 + PP_0205 0.15 +0.2
256,582 + PP_0205 0.15 +0.1
256,583 - PP_0205 0.16 +1.0
256,583 - PP_0205 0.16 -0.4
256,739 - PP_0205 0.25 +0.1
256,739 - PP_0205 0.25 -0.3
256,934 - PP_0205 0.36 +0.6
256,978 + PP_0205 0.38 -0.4
256,979 - PP_0205 0.38 +0.9
256,991 - PP_0205 0.39 +1.0
256,991 - PP_0205 0.39 +0.8
257,053 + PP_0205 0.43 -1.8
257,074 + PP_0205 0.44 -0.5
257,074 + PP_0205 0.44 -1.3
257,074 + PP_0205 0.44 -0.3
257,074 + PP_0205 0.44 +0.8
257,099 - PP_0205 0.45 -0.0
257,141 - PP_0205 0.48 -0.6

Or see this region's nucleotide sequence