Strain Fitness in Pseudomonas putida KT2440 around PP_0173

Experiment: Geraniol 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0171 and PP_0172 are separated by 14 nucleotidesPP_0172 and PP_0173 are separated by 117 nucleotidesPP_0173 and PP_0174 are separated by 114 nucleotides PP_0171: PP_0171 - ABC transporter, ATP-binding protein, at 223,172 to 224,035 _0171 PP_0172: PP_0172 - ABC transporter, permease protein, at 224,050 to 224,913 _0172 PP_0173: PP_0173 - putative transcriptional factor-related protein, at 225,031 to 225,660 _0173 PP_0174: PP_0174 - conserved protein of unknown function, at 225,775 to 226,593 _0174 Position (kb) 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 224.058 kb on + strandat 224.059 kb on - strandat 224.059 kb on - strandat 224.059 kb on - strandat 224.077 kb on + strandat 224.078 kb on - strandat 224.115 kb on - strandat 224.177 kb on + strand, within PP_0172at 224.177 kb on + strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.325 kb on - strand, within PP_0172at 224.327 kb on + strand, within PP_0172at 224.342 kb on - strand, within PP_0172at 224.342 kb on - strand, within PP_0172at 224.342 kb on - strand, within PP_0172at 224.412 kb on - strand, within PP_0172at 224.531 kb on + strand, within PP_0172at 224.532 kb on - strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.551 kb on - strand, within PP_0172at 224.551 kb on - strand, within PP_0172at 224.551 kb on - strand, within PP_0172at 224.554 kb on + strand, within PP_0172at 224.554 kb on + strand, within PP_0172at 224.555 kb on - strand, within PP_0172at 224.605 kb on + strand, within PP_0172at 224.605 kb on + strand, within PP_0172at 224.605 kb on + strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.631 kb on - strand, within PP_0172at 224.631 kb on - strand, within PP_0172at 224.707 kb on - strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.713 kb on - strand, within PP_0172at 224.714 kb on + strand, within PP_0172at 224.727 kb on - strand, within PP_0172at 224.727 kb on - strand, within PP_0172at 224.767 kb on + strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.794 kb on + strand, within PP_0172at 224.795 kb on - strand, within PP_0172at 224.796 kb on + strand, within PP_0172at 224.868 kb on + strandat 224.919 kb on - strandat 224.954 kb on + strandat 224.954 kb on + strandat 225.044 kb on + strandat 225.045 kb on - strandat 225.106 kb on + strand, within PP_0173at 225.106 kb on + strand, within PP_0173at 225.107 kb on - strand, within PP_0173at 225.146 kb on - strand, within PP_0173at 225.163 kb on + strand, within PP_0173at 225.164 kb on - strand, within PP_0173at 225.512 kb on - strand, within PP_0173at 225.512 kb on - strand, within PP_0173at 225.512 kb on - strand, within PP_0173at 225.512 kb on - strand, within PP_0173at 225.512 kb on - strand, within PP_0173at 225.597 kb on - strand, within PP_0173at 225.609 kb on + strandat 225.623 kb on + strandat 225.623 kb on + strandat 225.623 kb on + strandat 225.623 kb on + strandat 225.624 kb on - strandat 225.816 kb on + strandat 225.828 kb on - strandat 225.974 kb on - strand, within PP_0174at 225.974 kb on - strand, within PP_0174at 226.054 kb on + strand, within PP_0174at 226.151 kb on - strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strandat 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.312 kb on + strand, within PP_0174at 226.312 kb on + strand, within PP_0174at 226.313 kb on - strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.398 kb on - strand, within PP_0174at 226.398 kb on - strandat 226.398 kb on - strand, within PP_0174at 226.398 kb on - strand, within PP_0174at 226.424 kb on - strand, within PP_0174at 226.511 kb on - strand, within PP_0174at 226.595 kb on + strandat 226.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Geraniol 1 vol%
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224,058 + +0.5
224,059 - +0.4
224,059 - +1.0
224,059 - +0.9
224,077 + +0.9
224,078 - +1.0
224,115 - +1.6
224,177 + PP_0172 0.15 +0.3
224,177 + PP_0172 0.15 -0.2
224,178 - PP_0172 0.15 +0.9
224,178 - PP_0172 0.15 +1.0
224,178 - PP_0172 0.15 +1.3
224,178 - PP_0172 0.15 +0.3
224,325 - PP_0172 0.32 -0.2
224,327 + PP_0172 0.32 -0.2
224,342 - PP_0172 0.34 +1.3
224,342 - PP_0172 0.34 +0.5
224,342 - PP_0172 0.34 +2.8
224,412 - PP_0172 0.42 +0.4
224,531 + PP_0172 0.56 -0.1
224,532 - PP_0172 0.56 -0.5
224,550 + PP_0172 0.58 -0.6
224,550 + PP_0172 0.58 -0.7
224,550 + PP_0172 0.58 +0.5
224,550 + PP_0172 0.58 +1.2
224,550 + PP_0172 0.58 +0.0
224,550 + PP_0172 0.58 -1.2
224,551 - PP_0172 0.58 +0.1
224,551 - PP_0172 0.58 +0.6
224,551 - PP_0172 0.58 +0.9
224,554 + PP_0172 0.58 +0.0
224,554 + PP_0172 0.58 -0.5
224,555 - PP_0172 0.58 +1.0
224,605 + PP_0172 0.64 -0.3
224,605 + PP_0172 0.64 +0.4
224,605 + PP_0172 0.64 +0.1
224,606 - PP_0172 0.64 -0.5
224,606 - PP_0172 0.64 -0.3
224,606 - PP_0172 0.64 -0.1
224,606 - PP_0172 0.64 +1.4
224,606 - PP_0172 0.64 +0.9
224,606 - PP_0172 0.64 +0.9
224,631 - PP_0172 0.67 +1.1
224,631 - PP_0172 0.67 +0.0
224,707 - PP_0172 0.76 +1.7
224,712 + PP_0172 0.77 +0.5
224,712 + PP_0172 0.77 -0.8
224,712 + PP_0172 0.77 -0.5
224,712 + PP_0172 0.77 -0.7
224,713 - PP_0172 0.77 +0.9
224,714 + PP_0172 0.77 -0.5
224,727 - PP_0172 0.78 +0.2
224,727 - PP_0172 0.78 +0.4
224,767 + PP_0172 0.83 +0.2
224,768 - PP_0172 0.83 +0.9
224,768 - PP_0172 0.83 +1.5
224,768 - PP_0172 0.83 +3.0
224,768 - PP_0172 0.83 +0.2
224,768 - PP_0172 0.83 +1.3
224,794 + PP_0172 0.86 +0.5
224,795 - PP_0172 0.86 -0.3
224,796 + PP_0172 0.86 -1.2
224,868 + +0.6
224,919 - +0.2
224,954 + -0.1
224,954 + +0.6
225,044 + -0.7
225,045 - -1.0
225,106 + PP_0173 0.12 -2.1
225,106 + PP_0173 0.12 -0.6
225,107 - PP_0173 0.12 -1.7
225,146 - PP_0173 0.18 -2.7
225,163 + PP_0173 0.21 -0.9
225,164 - PP_0173 0.21 -0.7
225,512 - PP_0173 0.76 -0.3
225,512 - PP_0173 0.76 -1.2
225,512 - PP_0173 0.76 -2.3
225,512 - PP_0173 0.76 -2.1
225,512 - PP_0173 0.76 -2.1
225,597 - PP_0173 0.90 -2.8
225,609 + +1.5
225,623 + +1.7
225,623 + +2.3
225,623 + +2.5
225,623 + +2.0
225,624 - -2.3
225,816 + -2.5
225,828 - -1.5
225,974 - PP_0174 0.24 -0.8
225,974 - PP_0174 0.24 -2.3
226,054 + PP_0174 0.34 -2.2
226,151 - PP_0174 0.46 -2.3
226,177 + PP_0174 0.49 -2.2
226,177 + PP_0174 0.49 -2.5
226,177 + PP_0174 0.49 -1.9
226,177 + PP_0174 0.49 -1.7
226,177 + PP_0174 0.49 -2.4
226,177 + PP_0174 0.49 -1.4
226,177 + PP_0174 0.49 -1.7
226,177 + PP_0174 0.49 -2.0
226,178 - PP_0174 0.49 -1.1
226,178 - PP_0174 0.49 -1.1
226,178 - PP_0174 0.49 -1.5
226,178 - PP_0174 0.49 -1.1
226,178 - PP_0174 0.49 -2.2
226,255 + PP_0174 0.59 -3.0
226,255 + PP_0174 0.59 -1.5
226,255 + PP_0174 0.59 +1.4
226,256 - PP_0174 0.59 -0.7
226,256 - PP_0174 0.59 -3.2
226,256 - -0.3
226,256 - PP_0174 0.59 -2.0
226,256 - PP_0174 0.59 +1.0
226,256 - PP_0174 0.59 -0.5
226,256 - PP_0174 0.59 -0.3
226,312 + PP_0174 0.66 -1.6
226,312 + PP_0174 0.66 -2.1
226,313 - PP_0174 0.66 -2.3
226,397 + PP_0174 0.76 -1.6
226,397 + PP_0174 0.76 -1.2
226,397 + PP_0174 0.76 -0.3
226,397 + PP_0174 0.76 -2.2
226,398 - PP_0174 0.76 -1.5
226,398 - +0.0
226,398 - PP_0174 0.76 -1.4
226,398 - PP_0174 0.76 -0.8
226,424 - PP_0174 0.79 -0.7
226,511 - PP_0174 0.90 -1.0
226,595 + -2.0
226,634 - -1.2

Or see this region's nucleotide sequence