Strain Fitness in Pseudomonas putida KT2440 around PP_0169

Experiment: Geraniol 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0168 and PP_5431 are separated by 127 nucleotidesPP_5431 and PP_0169 are separated by 198 nucleotidesPP_0169 and PP_0170 are separated by 17 nucleotides PP_0168: PP_0168 - putative surface adhesion protein, at 194,495 to 220,543 _0168 PP_5431: PP_5431 - conserved protein of unknown function, at 220,671 to 221,030 _5431 PP_0169: PP_0169 - Dioxygenase, TauD/TfdA family, at 221,229 to 222,128 _0169 PP_0170: PP_0170 - ABC transporter, periplasmic binding protein, at 222,146 to 223,165 _0170 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.298 kb on - strandat 220.349 kb on + strandat 220.349 kb on + strandat 220.474 kb on + strandat 220.475 kb on - strandat 220.602 kb on + strandat 220.603 kb on - strandat 220.603 kb on - strandat 220.642 kb on - strandat 220.654 kb on - strandat 220.654 kb on - strandat 220.695 kb on + strandat 220.696 kb on - strandat 220.696 kb on - strandat 221.090 kb on - strandat 221.327 kb on - strand, within PP_0169at 221.327 kb on - strand, within PP_0169at 221.372 kb on + strand, within PP_0169at 221.423 kb on + strand, within PP_0169at 221.423 kb on + strand, within PP_0169at 221.423 kb on + strand, within PP_0169at 221.424 kb on - strand, within PP_0169at 221.470 kb on + strand, within PP_0169at 221.470 kb on + strand, within PP_0169at 221.471 kb on - strand, within PP_0169at 221.471 kb on - strand, within PP_0169at 221.602 kb on - strand, within PP_0169at 221.602 kb on - strand, within PP_0169at 221.687 kb on + strand, within PP_0169at 221.687 kb on + strand, within PP_0169at 221.688 kb on + strand, within PP_0169at 221.688 kb on - strand, within PP_0169at 221.688 kb on - strand, within PP_0169at 221.688 kb on - strand, within PP_0169at 221.704 kb on + strand, within PP_0169at 221.754 kb on + strand, within PP_0169at 221.755 kb on - strand, within PP_0169at 221.755 kb on - strand, within PP_0169at 221.757 kb on - strand, within PP_0169at 221.964 kb on + strand, within PP_0169at 221.964 kb on + strand, within PP_0169at 221.965 kb on - strand, within PP_0169at 221.965 kb on - strand, within PP_0169at 221.965 kb on - strand, within PP_0169at 221.994 kb on + strand, within PP_0169at 221.995 kb on - strand, within PP_0169at 222.016 kb on - strand, within PP_0169at 222.016 kb on - strand, within PP_0169at 222.093 kb on + strandat 222.253 kb on + strand, within PP_0170at 222.253 kb on + strand, within PP_0170at 222.515 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.519 kb on - strand, within PP_0170at 222.578 kb on - strand, within PP_0170at 222.578 kb on - strand, within PP_0170at 222.627 kb on - strand, within PP_0170at 222.627 kb on - strand, within PP_0170at 222.659 kb on + strand, within PP_0170at 222.660 kb on - strand, within PP_0170at 222.660 kb on - strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.816 kb on - strand, within PP_0170at 222.822 kb on + strand, within PP_0170at 222.856 kb on + strand, within PP_0170at 222.890 kb on + strand, within PP_0170at 222.890 kb on + strand, within PP_0170at 222.965 kb on + strand, within PP_0170at 222.965 kb on + strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 223.031 kb on + strand, within PP_0170at 223.046 kb on - strand, within PP_0170at 223.061 kb on + strand, within PP_0170at 223.062 kb on - strand, within PP_0170at 223.062 kb on - strand, within PP_0170at 223.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Geraniol 1 vol%
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220,298 - -2.0
220,349 + -0.6
220,349 + -2.6
220,474 + -0.8
220,475 - -3.6
220,602 + +0.4
220,603 - +0.4
220,603 - -0.7
220,642 - -0.4
220,654 - -1.5
220,654 - -0.3
220,695 + -1.2
220,696 - -0.4
220,696 - +0.2
221,090 - +1.0
221,327 - PP_0169 0.11 +1.6
221,327 - PP_0169 0.11 +0.2
221,372 + PP_0169 0.16 -0.8
221,423 + PP_0169 0.22 -0.4
221,423 + PP_0169 0.22 +0.5
221,423 + PP_0169 0.22 +0.8
221,424 - PP_0169 0.22 +0.6
221,470 + PP_0169 0.27 +0.2
221,470 + PP_0169 0.27 +0.5
221,471 - PP_0169 0.27 -0.1
221,471 - PP_0169 0.27 +0.8
221,602 - PP_0169 0.41 +1.0
221,602 - PP_0169 0.41 +1.2
221,687 + PP_0169 0.51 +0.0
221,687 + PP_0169 0.51 +0.5
221,688 + PP_0169 0.51 +0.8
221,688 - PP_0169 0.51 +1.8
221,688 - PP_0169 0.51 +1.3
221,688 - PP_0169 0.51 +1.0
221,704 + PP_0169 0.53 +0.2
221,754 + PP_0169 0.58 -0.5
221,755 - PP_0169 0.58 +0.1
221,755 - PP_0169 0.58 +0.6
221,757 - PP_0169 0.59 +0.4
221,964 + PP_0169 0.82 -0.0
221,964 + PP_0169 0.82 -0.0
221,965 - PP_0169 0.82 +1.4
221,965 - PP_0169 0.82 +0.6
221,965 - PP_0169 0.82 +0.8
221,994 + PP_0169 0.85 -0.5
221,995 - PP_0169 0.85 +1.4
222,016 - PP_0169 0.87 -0.7
222,016 - PP_0169 0.87 +1.0
222,093 + -0.5
222,253 + PP_0170 0.10 +0.3
222,253 + PP_0170 0.10 +0.2
222,515 + PP_0170 0.36 +0.9
222,518 + PP_0170 0.36 +0.5
222,518 + PP_0170 0.36 +0.1
222,518 + PP_0170 0.36 -0.5
222,518 + PP_0170 0.36 +1.0
222,519 - PP_0170 0.37 +0.9
222,578 - PP_0170 0.42 +0.5
222,578 - PP_0170 0.42 +0.9
222,627 - PP_0170 0.47 +0.6
222,627 - PP_0170 0.47 +1.2
222,659 + PP_0170 0.50 -0.4
222,660 - PP_0170 0.50 +0.8
222,660 - PP_0170 0.50 +0.3
222,677 + PP_0170 0.52 +0.2
222,677 + PP_0170 0.52 -0.9
222,677 + PP_0170 0.52 +0.4
222,677 + PP_0170 0.52 +0.9
222,677 + PP_0170 0.52 +0.4
222,678 - PP_0170 0.52 +0.7
222,678 - PP_0170 0.52 +1.2
222,678 - PP_0170 0.52 +0.8
222,816 - PP_0170 0.66 +0.3
222,822 + PP_0170 0.66 +0.0
222,856 + PP_0170 0.70 +0.0
222,890 + PP_0170 0.73 -0.2
222,890 + PP_0170 0.73 +0.8
222,965 + PP_0170 0.80 +0.4
222,965 + PP_0170 0.80 +0.2
222,966 - PP_0170 0.80 +0.7
222,966 - PP_0170 0.80 +1.5
222,966 - PP_0170 0.80 +0.5
222,966 - PP_0170 0.80 +0.7
222,966 - PP_0170 0.80 +1.3
222,966 - PP_0170 0.80 -0.7
222,966 - PP_0170 0.80 +1.1
222,966 - PP_0170 0.80 +2.1
222,966 - PP_0170 0.80 +2.0
223,031 + PP_0170 0.87 +0.7
223,046 - PP_0170 0.88 +0.6
223,061 + PP_0170 0.90 -0.8
223,062 - PP_0170 0.90 +0.9
223,062 - PP_0170 0.90 +1.9
223,127 + -0.1

Or see this region's nucleotide sequence