Strain Fitness in Pseudomonas putida KT2440 around PP_0058

Experiment: Geraniol 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Geraniol 1 vol%
67,488	+		PP_0057	0.49	-0.4
67,489	-		PP_0057	0.49	-0.4
67,489	-		PP_0057	0.49	-0.0
67,489	-		PP_0057	0.49	-0.4
67,489	-		PP_0057	0.49	-0.1
67,503	+		PP_0057	0.50	-0.2
67,503	+		PP_0057	0.50	-0.7
67,504	-		PP_0057	0.50	-0.9
67,504	-		PP_0057	0.50	-2.1
67,504	-		PP_0057	0.50	+0.3
67,504	-		PP_0057	0.50	-0.6
67,504	-		PP_0057	0.50	-0.3
67,625	+		PP_0057	0.58	-0.0
67,672	+		PP_0057	0.60	-0.2
67,672	+		PP_0057	0.60	-1.2
67,673	-		PP_0057	0.60	-0.2
67,677	+		PP_0057	0.61	+0.4
67,677	+		PP_0057	0.61	-0.2
67,677	+		PP_0057	0.61	-0.8
67,677	+		PP_0057	0.61	+0.3
67,678	-		PP_0057	0.61	-1.4
67,678	-		PP_0057	0.61	+0.8
67,678	-		PP_0057	0.61	+0.2
67,678	-		PP_0057	0.61	+1.2
67,678	-		PP_0057	0.61	-0.3
67,678	-		PP_0057	0.61	+0.3
67,678	-		PP_0057	0.61	-0.3
67,708	-		PP_0057	0.63	-0.1
67,877	+		PP_0057	0.73	+1.2
67,897	-		PP_0057	0.74	+0.5
68,011	+		PP_0057	0.81	-2.0
68,012	-		PP_0057	0.81	-0.1
68,012	-		PP_0057	0.81	-0.0
68,012	-		PP_0057	0.81	-0.0
68,012	-		PP_0057	0.81	-1.1
68,012	-		PP_0057	0.81	-0.3
68,023	+		PP_0057	0.82	+0.0
68,024	-		PP_0057	0.82	-0.1
68,061	+		PP_0057	0.84	-0.0
68,061	+		PP_0057	0.84	-2.1
68,061	+		PP_0057	0.84	-0.0
68,062	-		PP_0057	0.85	+0.2
68,062	-		PP_0057	0.85	-0.1
68,062	-		PP_0057	0.85	-0.1
68,062	-		PP_0057	0.85	-0.6
68,112	+		PP_0057	0.88	-0.5
68,112	+		PP_0057	0.88	-0.2
68,113	-		PP_0057	0.88	+0.5
68,113	-		PP_0057	0.88	-0.2
68,134	-		PP_0057	0.89	+0.5
68,144	+		PP_0057	0.90	+0.0
68,144	+		PP_0057	0.90	+0.8
68,171	+				+0.7
68,196	+				-0.8
68,197	-				-0.0
68,198	+				-0.9
68,208	-				-0.5
68,214	+				-0.8
68,215	-				+0.2
68,293	+				-0.8
68,294	-				-0.4
68,294	-				-0.1
68,297	+				-0.1
68,298	-				+0.3
68,298	-				-0.5
68,326	+				-0.1
68,327	-				-0.5
68,342	-				+0.1
68,617	+		PP_0058	0.17	-0.9
68,618	-		PP_0058	0.17	-1.8
68,634	+		PP_0058	0.19	-1.4
68,634	+		PP_0058	0.19	-1.5
68,781	+		PP_0058	0.37	-0.9
68,859	+		PP_0058	0.47	-2.3
68,931	+		PP_0058	0.56	-3.8
68,931	+		PP_0058	0.56	+0.2
68,932	-		PP_0058	0.57	-1.7
68,932	-		PP_0058	0.57	-1.5
68,932	-		PP_0058	0.57	-1.6
68,935	+		PP_0058	0.57	-0.9
68,935	+		PP_0058	0.57	-0.7
68,935	+		PP_0058	0.57	-1.3
68,935	+		PP_0058	0.57	-1.4
68,935	+		PP_0058	0.57	-1.3
68,935	+		PP_0058	0.57	-1.1
68,935	+		PP_0058	0.57	-0.8
68,935	+		PP_0058	0.57	-0.6
68,936	-		PP_0058	0.57	-1.3
68,936	-		PP_0058	0.57	-0.7
68,936	-		PP_0058	0.57	-1.7
68,936	-		PP_0058	0.57	-1.6
68,936	-		PP_0058	0.57	-1.4
68,936	-		PP_0058	0.57	-1.3
68,964	-		PP_0058	0.61	-2.0
68,977	+		PP_0058	0.62	-1.0
69,071	-		PP_0058	0.74	-1.2
69,071	-		PP_0058	0.74	-1.2
69,121	+		PP_0058	0.81	-0.9
69,122	-		PP_0058	0.81	-0.8
69,139	+		PP_0058	0.83	-1.8
69,140	-		PP_0058	0.83	-0.9
69,220	+				-0.5
69,258	-				-0.5
69,258	-				+0.3
69,268	-				-0.1