Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF447

Experiment: LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF445 and GFF446 are separated by 174 nucleotidesGFF446 and GFF447 are separated by 22 nucleotidesGFF447 and GFF448 are separated by 261 nucleotidesGFF448 and GFF449 are separated by 138 nucleotides GFF445 - Xylulose kinase (EC 2.7.1.17), at 166,711 to 168,165 GFF445 GFF446 - Inner membrane protein YiaB, at 168,340 to 168,693 GFF446 GFF447 - Inner membrane protein YiaH, at 168,716 to 169,711 GFF447 GFF448 - Uncharacterized lipoprotein YsaB precursor, at 169,973 to 170,179 GFF448 GFF449 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 170,318 to 171,229 GFF449 Position (kb) 168 169 170Strain fitness (log2 ratio) -1 0 1at 167.822 kb on - strand, within GFF445at 167.838 kb on + strand, within GFF445at 167.912 kb on - strand, within GFF445at 167.927 kb on + strand, within GFF445at 167.928 kb on - strand, within GFF445at 167.961 kb on + strand, within GFF445at 168.022 kb on - strandat 168.044 kb on + strandat 168.044 kb on + strandat 168.207 kb on - strandat 168.241 kb on + strandat 168.390 kb on - strand, within GFF446at 168.390 kb on - strand, within GFF446at 168.409 kb on + strand, within GFF446at 168.410 kb on - strand, within GFF446at 168.458 kb on - strand, within GFF446at 168.588 kb on - strand, within GFF446at 168.648 kb on + strand, within GFF446at 168.648 kb on + strand, within GFF446at 168.648 kb on + strand, within GFF446at 168.648 kb on + strand, within GFF446at 168.648 kb on + strand, within GFF446at 168.649 kb on - strand, within GFF446at 168.650 kb on + strand, within GFF446at 168.651 kb on - strand, within GFF446at 168.651 kb on - strand, within GFF446at 168.652 kb on + strand, within GFF446at 168.653 kb on - strand, within GFF446at 168.667 kb on + strandat 168.677 kb on - strandat 168.718 kb on - strandat 168.722 kb on - strandat 168.736 kb on + strandat 168.749 kb on + strandat 168.750 kb on - strandat 168.844 kb on + strand, within GFF447at 168.848 kb on + strand, within GFF447at 168.951 kb on - strand, within GFF447at 169.002 kb on + strand, within GFF447at 169.003 kb on - strand, within GFF447at 169.034 kb on + strand, within GFF447at 169.061 kb on - strand, within GFF447at 169.151 kb on - strand, within GFF447at 169.164 kb on + strand, within GFF447at 169.167 kb on + strand, within GFF447at 169.167 kb on + strand, within GFF447at 169.168 kb on - strand, within GFF447at 169.189 kb on - strand, within GFF447at 169.189 kb on - strand, within GFF447at 169.189 kb on - strand, within GFF447at 169.189 kb on - strand, within GFF447at 169.246 kb on + strand, within GFF447at 169.255 kb on + strand, within GFF447at 169.329 kb on + strand, within GFF447at 169.421 kb on - strand, within GFF447at 169.478 kb on - strand, within GFF447at 169.639 kb on + strandat 169.639 kb on + strandat 169.639 kb on + strandat 169.639 kb on + strandat 169.640 kb on - strandat 169.640 kb on - strandat 169.640 kb on - strandat 169.642 kb on + strandat 169.778 kb on - strandat 169.841 kb on + strandat 169.841 kb on + strandat 169.844 kb on + strandat 169.845 kb on - strandat 169.845 kb on - strandat 169.908 kb on + strandat 169.970 kb on - strandat 170.090 kb on + strand, within GFF448at 170.090 kb on + strand, within GFF448at 170.091 kb on - strand, within GFF448at 170.091 kb on - strand, within GFF448at 170.251 kb on - strandat 170.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
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167,822 - GFF445 0.76 -0.4
167,838 + GFF445 0.77 -0.1
167,912 - GFF445 0.83 -0.0
167,927 + GFF445 0.84 +0.6
167,928 - GFF445 0.84 -0.0
167,961 + GFF445 0.86 -0.8
168,022 - +0.5
168,044 + +0.7
168,044 + -0.1
168,207 - -0.1
168,241 + -1.0
168,390 - GFF446 0.14 -0.7
168,390 - GFF446 0.14 +0.3
168,409 + GFF446 0.19 -0.3
168,410 - GFF446 0.20 -0.1
168,458 - GFF446 0.33 +0.2
168,588 - GFF446 0.70 +0.1
168,648 + GFF446 0.87 -0.2
168,648 + GFF446 0.87 +0.4
168,648 + GFF446 0.87 -0.1
168,648 + GFF446 0.87 +0.0
168,648 + GFF446 0.87 +0.3
168,649 - GFF446 0.87 +0.8
168,650 + GFF446 0.88 +0.2
168,651 - GFF446 0.88 +0.3
168,651 - GFF446 0.88 +0.1
168,652 + GFF446 0.88 +0.1
168,653 - GFF446 0.88 -1.1
168,667 + -0.3
168,677 - -1.0
168,718 - -0.1
168,722 - -0.6
168,736 + -0.1
168,749 + -0.4
168,750 - +0.2
168,844 + GFF447 0.13 +0.2
168,848 + GFF447 0.13 +0.1
168,951 - GFF447 0.24 -0.3
169,002 + GFF447 0.29 +0.1
169,003 - GFF447 0.29 -0.2
169,034 + GFF447 0.32 +0.6
169,061 - GFF447 0.35 -0.1
169,151 - GFF447 0.44 +0.8
169,164 + GFF447 0.45 +0.4
169,167 + GFF447 0.45 +0.2
169,167 + GFF447 0.45 +0.5
169,168 - GFF447 0.45 -0.5
169,189 - GFF447 0.47 +0.1
169,189 - GFF447 0.47 +0.5
169,189 - GFF447 0.47 +0.1
169,189 - GFF447 0.47 +0.8
169,246 + GFF447 0.53 -0.1
169,255 + GFF447 0.54 +0.3
169,329 + GFF447 0.62 +0.2
169,421 - GFF447 0.71 -0.5
169,478 - GFF447 0.77 +1.5
169,639 + +0.2
169,639 + -0.0
169,639 + -0.4
169,639 + +0.3
169,640 - +0.4
169,640 - +0.2
169,640 - -0.1
169,642 + -0.1
169,778 - -0.7
169,841 + -1.4
169,841 + +0.1
169,844 + -0.0
169,845 - +0.4
169,845 - -0.2
169,908 + -0.3
169,970 - +0.4
170,090 + GFF448 0.57 -0.6
170,090 + GFF448 0.57 +0.2
170,091 - GFF448 0.57 +1.1
170,091 - GFF448 0.57 +0.0
170,251 - -0.9
170,270 + -1.7

Or see this region's nucleotide sequence