Experiment: LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4008 and GFF4009 overlap by 1 nucleotides GFF4009 and GFF4010 are separated by 56 nucleotides GFF4010 and GFF4011 overlap by 4 nucleotides GFF4011 and GFF4012 are separated by 4 nucleotides GFF4012 and GFF4013 are separated by 104 nucleotides
GFF4008 - Flagellar biosynthesis protein FliP, at 278,790 to 279,527
GFF4008
GFF4009 - Flagellar biosynthesis protein FliQ, at 279,527 to 279,847
GFF4009
GFF4010 - Flagellar motor switch protein FliN, at 279,904 to 280,317
GFF4010
GFF4011 - Flagellar motor switch protein FliM, at 280,314 to 281,318
GFF4011
GFF4012 - Flagellar biosynthesis protein FliL, at 281,323 to 281,790
GFF4012
GFF4013 - Flagellar hook-length control protein FliK, at 281,895 to 283,112
GFF4013
Position (kb) 280
281
282 Strain fitness (log2 ratio) -1
0
1 at 279.513 kb on + strand at 279.513 kb on + strand at 279.817 kb on + strand at 279.828 kb on - strand at 279.925 kb on - strand at 279.942 kb on + strand at 279.969 kb on + strand, within GFF4010 at 280.167 kb on + strand, within GFF4010 at 280.168 kb on - strand, within GFF4010 at 280.303 kb on - strand at 280.368 kb on + strand at 280.381 kb on + strand at 280.443 kb on - strand, within GFF4011 at 280.443 kb on - strand, within GFF4011 at 280.674 kb on - strand, within GFF4011 at 280.716 kb on - strand, within GFF4011 at 280.749 kb on - strand, within GFF4011 at 280.749 kb on - strand, within GFF4011 at 280.784 kb on - strand, within GFF4011 at 280.851 kb on - strand, within GFF4011 at 281.068 kb on - strand, within GFF4011 at 281.068 kb on - strand, within GFF4011 at 281.148 kb on - strand, within GFF4011 at 281.151 kb on - strand, within GFF4011 at 281.196 kb on - strand, within GFF4011 at 281.206 kb on + strand, within GFF4011 at 281.206 kb on + strand, within GFF4011 at 281.207 kb on - strand, within GFF4011 at 281.306 kb on + strand at 281.344 kb on - strand at 281.511 kb on - strand, within GFF4012 at 281.567 kb on + strand, within GFF4012 at 281.567 kb on + strand, within GFF4012 at 281.568 kb on - strand, within GFF4012 at 281.691 kb on - strand, within GFF4012 at 281.691 kb on - strand, within GFF4012 at 281.695 kb on - strand, within GFF4012 at 281.822 kb on - strand at 281.884 kb on + strand at 281.965 kb on - strand at 282.159 kb on - strand, within GFF4013 at 282.160 kb on - strand, within GFF4013 at 282.270 kb on + strand, within GFF4013 at 282.270 kb on + strand, within GFF4013 at 282.271 kb on - strand, within GFF4013 at 282.271 kb on - strand, within GFF4013
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI remove 279,513 + +0.0 279,513 + -0.6 279,817 + -1.1 279,828 - +0.6 279,925 - +0.3 279,942 + +0.4 279,969 + GFF4010 0.16 +0.3 280,167 + GFF4010 0.64 +0.1 280,168 - GFF4010 0.64 +1.1 280,303 - +0.4 280,368 + +0.5 280,381 + +0.6 280,443 - GFF4011 0.13 +1.1 280,443 - GFF4011 0.13 +0.8 280,674 - GFF4011 0.36 +0.8 280,716 - GFF4011 0.40 +0.3 280,749 - GFF4011 0.43 +1.3 280,749 - GFF4011 0.43 +0.7 280,784 - GFF4011 0.47 +0.7 280,851 - GFF4011 0.53 +0.6 281,068 - GFF4011 0.75 +0.7 281,068 - GFF4011 0.75 -0.1 281,148 - GFF4011 0.83 +0.6 281,151 - GFF4011 0.83 +0.7 281,196 - GFF4011 0.88 +0.7 281,206 + GFF4011 0.89 +1.3 281,206 + GFF4011 0.89 +0.9 281,207 - GFF4011 0.89 +1.1 281,306 + +0.6 281,344 - +0.4 281,511 - GFF4012 0.40 +0.9 281,567 + GFF4012 0.52 +0.5 281,567 + GFF4012 0.52 +0.4 281,568 - GFF4012 0.52 +0.4 281,691 - GFF4012 0.79 +0.4 281,691 - GFF4012 0.79 +0.8 281,695 - GFF4012 0.79 +0.7 281,822 - +0.6 281,884 + -0.5 281,965 - +0.6 282,159 - GFF4013 0.22 +0.5 282,160 - GFF4013 0.22 +0.5 282,270 + GFF4013 0.31 +0.8 282,270 + GFF4013 0.31 +1.7 282,271 - GFF4013 0.31 +0.6 282,271 - GFF4013 0.31 +0.2
Or see this region's nucleotide sequence