Experiment: LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2150 and GFF2151 overlap by 14 nucleotides GFF2151 and GFF2152 are separated by 210 nucleotides GFF2152 and GFF2153 are separated by 32 nucleotides GFF2153 and GFF2154 overlap by 1 nucleotides
GFF2150 - Transcriptional regulator, GntR family, at 40,363 to 40,992
GFF2150
GFF2151 - Transcriptional regulator, GntR family, at 40,979 to 41,644
GFF2151
GFF2152 - Putative membrane protein, at 41,855 to 43,123
GFF2152
GFF2153 - L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32), at 43,156 to 44,055
GFF2153
GFF2154 - L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32), at 44,055 to 44,672
GFF2154
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 40.917 kb on + strand, within GFF2150 at 40.963 kb on - strand at 40.963 kb on - strand at 41.047 kb on + strand, within GFF2151 at 41.070 kb on + strand, within GFF2151 at 41.090 kb on - strand, within GFF2151 at 41.094 kb on + strand, within GFF2151 at 41.095 kb on - strand, within GFF2151 at 41.327 kb on + strand, within GFF2151 at 41.327 kb on + strand, within GFF2151 at 41.328 kb on - strand, within GFF2151 at 41.447 kb on - strand, within GFF2151 at 41.450 kb on - strand, within GFF2151 at 41.450 kb on - strand, within GFF2151 at 41.622 kb on - strand at 41.696 kb on - strand at 41.698 kb on + strand at 41.719 kb on + strand at 41.737 kb on - strand at 41.737 kb on - strand at 41.854 kb on + strand at 41.965 kb on + strand at 42.016 kb on + strand, within GFF2152 at 42.044 kb on - strand, within GFF2152 at 42.143 kb on - strand, within GFF2152 at 42.143 kb on - strand, within GFF2152 at 42.419 kb on + strand, within GFF2152 at 42.430 kb on + strand, within GFF2152 at 42.500 kb on + strand, within GFF2152 at 42.500 kb on + strand, within GFF2152 at 42.500 kb on + strand, within GFF2152 at 42.501 kb on - strand, within GFF2152 at 42.613 kb on + strand, within GFF2152 at 42.637 kb on - strand, within GFF2152 at 42.768 kb on + strand, within GFF2152 at 42.968 kb on + strand, within GFF2152 at 42.986 kb on - strand, within GFF2152 at 43.037 kb on + strand at 43.302 kb on + strand, within GFF2153 at 43.306 kb on - strand, within GFF2153 at 43.460 kb on + strand, within GFF2153 at 43.460 kb on + strand, within GFF2153 at 43.487 kb on + strand, within GFF2153 at 43.488 kb on - strand, within GFF2153 at 43.585 kb on + strand, within GFF2153 at 43.585 kb on + strand, within GFF2153 at 43.587 kb on + strand, within GFF2153 at 43.591 kb on + strand, within GFF2153 at 43.592 kb on - strand, within GFF2153 at 43.592 kb on - strand, within GFF2153 at 43.594 kb on - strand, within GFF2153 at 43.594 kb on - strand, within GFF2153 at 43.696 kb on + strand, within GFF2153 at 43.697 kb on - strand, within GFF2153 at 43.987 kb on - strand at 43.996 kb on - strand at 44.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI remove 40,917 + GFF2150 0.88 -0.3 40,963 - +0.2 40,963 - -0.1 41,047 + GFF2151 0.10 -0.8 41,070 + GFF2151 0.14 -0.3 41,090 - GFF2151 0.17 -0.0 41,094 + GFF2151 0.17 +0.3 41,095 - GFF2151 0.17 -0.0 41,327 + GFF2151 0.52 +0.0 41,327 + GFF2151 0.52 +1.5 41,328 - GFF2151 0.52 -0.3 41,447 - GFF2151 0.70 +0.2 41,450 - GFF2151 0.71 -0.6 41,450 - GFF2151 0.71 +0.1 41,622 - +0.3 41,696 - +0.2 41,698 + -0.2 41,719 + +0.4 41,737 - -0.2 41,737 - +0.1 41,854 + -1.5 41,965 + +0.0 42,016 + GFF2152 0.13 -0.5 42,044 - GFF2152 0.15 -0.3 42,143 - GFF2152 0.23 +0.4 42,143 - GFF2152 0.23 +0.2 42,419 + GFF2152 0.44 -0.2 42,430 + GFF2152 0.45 +0.3 42,500 + GFF2152 0.51 -1.0 42,500 + GFF2152 0.51 -0.1 42,500 + GFF2152 0.51 -1.9 42,501 - GFF2152 0.51 +0.0 42,613 + GFF2152 0.60 -0.4 42,637 - GFF2152 0.62 +0.2 42,768 + GFF2152 0.72 +1.1 42,968 + GFF2152 0.88 -1.2 42,986 - GFF2152 0.89 -0.8 43,037 + -0.2 43,302 + GFF2153 0.16 +0.2 43,306 - GFF2153 0.17 +0.5 43,460 + GFF2153 0.34 +0.5 43,460 + GFF2153 0.34 +0.2 43,487 + GFF2153 0.37 -1.1 43,488 - GFF2153 0.37 +1.0 43,585 + GFF2153 0.48 +0.5 43,585 + GFF2153 0.48 +0.0 43,587 + GFF2153 0.48 -0.1 43,591 + GFF2153 0.48 -0.1 43,592 - GFF2153 0.48 -0.2 43,592 - GFF2153 0.48 -0.2 43,594 - GFF2153 0.49 +0.1 43,594 - GFF2153 0.49 +0.8 43,696 + GFF2153 0.60 +0.6 43,697 - GFF2153 0.60 +0.2 43,987 - -0.6 43,996 - +0.4 44,028 + -0.0
Or see this region's nucleotide sequence