Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2039

Experiment: LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2038 and GFF2039 are separated by 89 nucleotidesGFF2039 and GFF2040 overlap by 4 nucleotidesGFF2040 and GFF2041 overlap by 8 nucleotides GFF2038 - LysR family transcriptional regulator YfeR, at 4,789 to 5,715 GFF2038 GFF2039 - Putative cytochrome oxidase, at 5,805 to 6,803 GFF2039 GFF2040 - FIG074102: hypothetical protein, at 6,800 to 7,027 GFF2040 GFF2041 - DNA ligase (EC 6.5.1.2), at 7,020 to 9,035 GFF2041 Position (kb) 5 6 7Strain fitness (log2 ratio) -1 0 1at 4.951 kb on + strand, within GFF2038at 4.951 kb on + strand, within GFF2038at 5.123 kb on + strand, within GFF2038at 5.213 kb on - strand, within GFF2038at 5.394 kb on + strand, within GFF2038at 5.602 kb on + strand, within GFF2038at 5.603 kb on - strand, within GFF2038at 5.607 kb on + strand, within GFF2038at 5.688 kb on + strandat 5.847 kb on - strandat 6.122 kb on + strand, within GFF2039at 6.257 kb on - strand, within GFF2039at 6.264 kb on - strand, within GFF2039at 6.593 kb on + strand, within GFF2039at 6.682 kb on + strand, within GFF2039at 6.683 kb on - strand, within GFF2039at 6.908 kb on - strand, within GFF2040at 7.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
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4,951 + GFF2038 0.17 -0.4
4,951 + GFF2038 0.17 +0.0
5,123 + GFF2038 0.36 -1.2
5,213 - GFF2038 0.46 -0.7
5,394 + GFF2038 0.65 +0.8
5,602 + GFF2038 0.88 +0.1
5,603 - GFF2038 0.88 -0.1
5,607 + GFF2038 0.88 -0.7
5,688 + -0.0
5,847 - +0.8
6,122 + GFF2039 0.32 -0.1
6,257 - GFF2039 0.45 -0.7
6,264 - GFF2039 0.46 +0.6
6,593 + GFF2039 0.79 -0.3
6,682 + GFF2039 0.88 -0.6
6,683 - GFF2039 0.88 -0.1
6,908 - GFF2040 0.47 -0.1
7,032 + +0.2

Or see this region's nucleotide sequence