Strain Fitness in Escherichia coli BL21 around ECD_04204

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04392 and ECD_04203 overlap by 4 nucleotidesECD_04203 and ECD_04204 are separated by 9 nucleotidesECD_04204 and ECD_04205 are separated by 115 nucleotides ECD_04392: ECD_04392 - uncharacterized protein, at 4,472,947 to 4,473,204 _04392 ECD_04203: ECD_04203 - putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase, at 4,473,201 to 4,473,968 _04203 ECD_04204: ECD_04204 - putative 2-hydroxyglutaryl-CoA dehydratase, at 4,473,978 to 4,475,129 _04204 ECD_04205: ECD_04205 - zinc-type alcohol dehydrogenase-like protein, at 4,475,245 to 4,476,525 _04205 Position (kb) 4473 4474 4475 4476Strain fitness (log2 ratio) -3 -2 -1 0 1at 4473.040 kb on + strand, within ECD_04392at 4473.041 kb on - strand, within ECD_04392at 4473.494 kb on + strand, within ECD_04203at 4473.494 kb on + strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.816 kb on + strand, within ECD_04203at 4473.916 kb on - strandat 4473.961 kb on + strandat 4473.979 kb on + strandat 4473.980 kb on - strandat 4474.039 kb on + strandat 4474.058 kb on + strandat 4474.059 kb on - strandat 4474.060 kb on + strandat 4474.060 kb on + strandat 4474.060 kb on + strandat 4474.118 kb on - strand, within ECD_04204at 4474.149 kb on + strand, within ECD_04204at 4474.150 kb on - strand, within ECD_04204at 4474.150 kb on - strand, within ECD_04204at 4474.240 kb on + strand, within ECD_04204at 4474.244 kb on + strand, within ECD_04204at 4474.261 kb on + strand, within ECD_04204at 4474.262 kb on - strand, within ECD_04204at 4474.520 kb on - strand, within ECD_04204at 4474.563 kb on + strand, within ECD_04204at 4474.564 kb on - strand, within ECD_04204at 4474.780 kb on + strand, within ECD_04204at 4474.780 kb on + strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.840 kb on + strand, within ECD_04204at 4474.886 kb on + strand, within ECD_04204at 4475.003 kb on + strand, within ECD_04204at 4475.015 kb on - strandat 4475.015 kb on - strandat 4475.015 kb on - strandat 4475.157 kb on + strandat 4475.177 kb on - strandat 4475.179 kb on + strandat 4475.307 kb on + strandat 4475.341 kb on - strandat 4475.519 kb on - strand, within ECD_04205at 4475.778 kb on + strand, within ECD_04205at 4475.782 kb on - strand, within ECD_04205at 4475.782 kb on - strand, within ECD_04205at 4475.826 kb on + strand, within ECD_04205at 4476.001 kb on - strand, within ECD_04205at 4476.001 kb on - strand, within ECD_04205at 4476.069 kb on + strand, within ECD_04205at 4476.070 kb on - strand, within ECD_04205

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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4,473,040 + ECD_04392 0.36 -0.5
4,473,041 - ECD_04392 0.36 -0.4
4,473,494 + ECD_04203 0.38 -0.7
4,473,494 + ECD_04203 0.38 -1.2
4,473,495 - ECD_04203 0.38 -0.9
4,473,495 - ECD_04203 0.38 -0.7
4,473,495 - ECD_04203 0.38 -0.7
4,473,816 + ECD_04203 0.80 -0.7
4,473,916 - +0.2
4,473,961 + -0.9
4,473,979 + +0.0
4,473,980 - +0.3
4,474,039 + -3.3
4,474,058 + -2.1
4,474,059 - -0.1
4,474,060 + +0.2
4,474,060 + -0.5
4,474,060 + -1.2
4,474,118 - ECD_04204 0.12 -0.5
4,474,149 + ECD_04204 0.15 -0.2
4,474,150 - ECD_04204 0.15 -0.9
4,474,150 - ECD_04204 0.15 +0.8
4,474,240 + ECD_04204 0.23 -1.2
4,474,244 + ECD_04204 0.23 -0.3
4,474,261 + ECD_04204 0.25 -0.5
4,474,262 - ECD_04204 0.25 -0.4
4,474,520 - ECD_04204 0.47 +0.1
4,474,563 + ECD_04204 0.51 -2.1
4,474,564 - ECD_04204 0.51 -2.2
4,474,780 + ECD_04204 0.70 -0.1
4,474,780 + ECD_04204 0.70 -0.1
4,474,781 - ECD_04204 0.70 +0.7
4,474,781 - ECD_04204 0.70 -0.5
4,474,781 - ECD_04204 0.70 +0.0
4,474,840 + ECD_04204 0.75 -0.3
4,474,886 + ECD_04204 0.79 -0.6
4,475,003 + ECD_04204 0.89 -0.2
4,475,015 - +0.8
4,475,015 - -0.2
4,475,015 - -1.6
4,475,157 + -0.5
4,475,177 - +0.4
4,475,179 + -1.1
4,475,307 + -0.6
4,475,341 - -1.0
4,475,519 - ECD_04205 0.21 -1.0
4,475,778 + ECD_04205 0.42 -0.5
4,475,782 - ECD_04205 0.42 -0.5
4,475,782 - ECD_04205 0.42 +0.5
4,475,826 + ECD_04205 0.45 -0.2
4,476,001 - ECD_04205 0.59 +0.6
4,476,001 - ECD_04205 0.59 -0.4
4,476,069 + ECD_04205 0.64 -0.1
4,476,070 - ECD_04205 0.64 +1.2

Or see this region's nucleotide sequence