Strain Fitness in Escherichia coli BL21 around ECD_04202

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04201 and ECD_04202 are separated by 67 nucleotidesECD_04202 and ECD_04392 are separated by 64 nucleotidesECD_04392 and ECD_04203 overlap by 4 nucleotides ECD_04201: ECD_04201 - DUF1228 family putative inner membrane MFS superfamily transporter, at 4,470,776 to 4,471,954 _04201 ECD_04202: ECD_04202 - SdiA-regulated family putative membrane-anchored protein; putative phytase-like esterase, at 4,472,022 to 4,472,882 _04202 ECD_04392: ECD_04392 - uncharacterized protein, at 4,472,947 to 4,473,204 _04392 ECD_04203: ECD_04203 - putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase, at 4,473,201 to 4,473,968 _04203 Position (kb) 4472 4473Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4471.022 kb on - strand, within ECD_04201at 4471.099 kb on + strand, within ECD_04201at 4471.260 kb on + strand, within ECD_04201at 4471.276 kb on + strand, within ECD_04201at 4471.276 kb on + strand, within ECD_04201at 4471.276 kb on + strand, within ECD_04201at 4471.276 kb on + strand, within ECD_04201at 4471.277 kb on - strand, within ECD_04201at 4471.277 kb on - strand, within ECD_04201at 4471.277 kb on - strand, within ECD_04201at 4471.277 kb on - strand, within ECD_04201at 4471.277 kb on - strand, within ECD_04201at 4471.279 kb on - strand, within ECD_04201at 4471.328 kb on + strand, within ECD_04201at 4471.396 kb on + strand, within ECD_04201at 4471.397 kb on - strand, within ECD_04201at 4471.485 kb on + strand, within ECD_04201at 4471.486 kb on - strand, within ECD_04201at 4471.486 kb on - strand, within ECD_04201at 4471.564 kb on + strand, within ECD_04201at 4471.749 kb on - strand, within ECD_04201at 4471.777 kb on - strand, within ECD_04201at 4471.777 kb on - strand, within ECD_04201at 4471.777 kb on - strand, within ECD_04201at 4471.846 kb on + strandat 4471.846 kb on + strandat 4471.847 kb on - strandat 4471.847 kb on - strandat 4471.852 kb on + strandat 4471.853 kb on - strandat 4471.869 kb on - strandat 4471.876 kb on + strandat 4471.881 kb on - strandat 4471.881 kb on - strandat 4471.881 kb on - strandat 4471.881 kb on - strandat 4472.050 kb on + strandat 4472.077 kb on + strandat 4472.077 kb on + strandat 4472.078 kb on - strandat 4472.081 kb on + strandat 4472.126 kb on + strand, within ECD_04202at 4472.250 kb on - strand, within ECD_04202at 4472.292 kb on + strand, within ECD_04202at 4472.328 kb on - strand, within ECD_04202at 4472.332 kb on - strand, within ECD_04202at 4472.375 kb on + strand, within ECD_04202at 4472.510 kb on - strand, within ECD_04202at 4472.561 kb on - strand, within ECD_04202at 4472.663 kb on + strand, within ECD_04202at 4472.663 kb on + strand, within ECD_04202at 4472.672 kb on + strand, within ECD_04202at 4472.673 kb on - strand, within ECD_04202at 4472.705 kb on + strand, within ECD_04202at 4472.708 kb on + strand, within ECD_04202at 4472.810 kb on + strandat 4472.895 kb on - strandat 4472.907 kb on + strandat 4472.922 kb on + strandat 4472.925 kb on - strandat 4472.925 kb on - strandat 4473.040 kb on + strand, within ECD_04392at 4473.041 kb on - strand, within ECD_04392at 4473.494 kb on + strand, within ECD_04203at 4473.494 kb on + strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.816 kb on + strand, within ECD_04203

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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4,471,022 - ECD_04201 0.21 -1.6
4,471,099 + ECD_04201 0.27 -1.0
4,471,260 + ECD_04201 0.41 -1.5
4,471,276 + ECD_04201 0.42 -1.0
4,471,276 + ECD_04201 0.42 -1.2
4,471,276 + ECD_04201 0.42 -0.9
4,471,276 + ECD_04201 0.42 -1.2
4,471,277 - ECD_04201 0.42 -0.8
4,471,277 - ECD_04201 0.42 -1.1
4,471,277 - ECD_04201 0.42 -1.5
4,471,277 - ECD_04201 0.42 -0.5
4,471,277 - ECD_04201 0.42 -0.3
4,471,279 - ECD_04201 0.43 -0.8
4,471,328 + ECD_04201 0.47 -0.5
4,471,396 + ECD_04201 0.53 -0.2
4,471,397 - ECD_04201 0.53 -1.1
4,471,485 + ECD_04201 0.60 +0.1
4,471,486 - ECD_04201 0.60 -1.7
4,471,486 - ECD_04201 0.60 -0.4
4,471,564 + ECD_04201 0.67 -1.2
4,471,749 - ECD_04201 0.83 -1.1
4,471,777 - ECD_04201 0.85 +0.2
4,471,777 - ECD_04201 0.85 -0.3
4,471,777 - ECD_04201 0.85 +0.3
4,471,846 + -1.0
4,471,846 + -0.7
4,471,847 - -0.2
4,471,847 - -0.5
4,471,852 + -2.5
4,471,853 - -0.7
4,471,869 - +0.4
4,471,876 + +0.0
4,471,881 - -0.0
4,471,881 - -0.6
4,471,881 - -0.6
4,471,881 - -0.4
4,472,050 + -1.3
4,472,077 + -1.6
4,472,077 + -0.8
4,472,078 - -0.4
4,472,081 + -0.5
4,472,126 + ECD_04202 0.12 -4.3
4,472,250 - ECD_04202 0.26 -2.1
4,472,292 + ECD_04202 0.31 -0.8
4,472,328 - ECD_04202 0.36 -0.3
4,472,332 - ECD_04202 0.36 -1.4
4,472,375 + ECD_04202 0.41 +0.1
4,472,510 - ECD_04202 0.57 -0.6
4,472,561 - ECD_04202 0.63 -1.2
4,472,663 + ECD_04202 0.74 -0.8
4,472,663 + ECD_04202 0.74 -0.0
4,472,672 + ECD_04202 0.75 -1.3
4,472,673 - ECD_04202 0.76 -2.7
4,472,705 + ECD_04202 0.79 -1.6
4,472,708 + ECD_04202 0.80 -0.5
4,472,810 + -1.6
4,472,895 - +0.3
4,472,907 + -0.6
4,472,922 + -0.3
4,472,925 - -0.5
4,472,925 - -0.5
4,473,040 + ECD_04392 0.36 -0.5
4,473,041 - ECD_04392 0.36 -0.4
4,473,494 + ECD_04203 0.38 -0.7
4,473,494 + ECD_04203 0.38 -1.2
4,473,495 - ECD_04203 0.38 -0.9
4,473,495 - ECD_04203 0.38 -0.7
4,473,495 - ECD_04203 0.38 -0.7
4,473,816 + ECD_04203 0.80 -0.7

Or see this region's nucleotide sequence