Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04201 and ECD_04202 are separated by 67 nucleotides ECD_04202 and ECD_04392 are separated by 64 nucleotides ECD_04392 and ECD_04203 overlap by 4 nucleotides
ECD_04201: ECD_04201 - DUF1228 family putative inner membrane MFS superfamily transporter, at 4,470,776 to 4,471,954
_04201
ECD_04202: ECD_04202 - SdiA-regulated family putative membrane-anchored protein; putative phytase-like esterase, at 4,472,022 to 4,472,882
_04202
ECD_04392: ECD_04392 - uncharacterized protein, at 4,472,947 to 4,473,204
_04392
ECD_04203: ECD_04203 - putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase, at 4,473,201 to 4,473,968
_04203
Position (kb)
4472
4473 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4471.022 kb on - strand, within ECD_04201 at 4471.099 kb on + strand, within ECD_04201 at 4471.260 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.279 kb on - strand, within ECD_04201 at 4471.328 kb on + strand, within ECD_04201 at 4471.396 kb on + strand, within ECD_04201 at 4471.397 kb on - strand, within ECD_04201 at 4471.485 kb on + strand, within ECD_04201 at 4471.486 kb on - strand, within ECD_04201 at 4471.486 kb on - strand, within ECD_04201 at 4471.564 kb on + strand, within ECD_04201 at 4471.749 kb on - strand, within ECD_04201 at 4471.777 kb on - strand, within ECD_04201 at 4471.777 kb on - strand, within ECD_04201 at 4471.777 kb on - strand, within ECD_04201 at 4471.846 kb on + strand at 4471.846 kb on + strand at 4471.847 kb on - strand at 4471.847 kb on - strand at 4471.852 kb on + strand at 4471.853 kb on - strand at 4471.869 kb on - strand at 4471.876 kb on + strand at 4471.881 kb on - strand at 4471.881 kb on - strand at 4471.881 kb on - strand at 4471.881 kb on - strand at 4472.050 kb on + strand at 4472.077 kb on + strand at 4472.077 kb on + strand at 4472.078 kb on - strand at 4472.081 kb on + strand at 4472.126 kb on + strand, within ECD_04202 at 4472.250 kb on - strand, within ECD_04202 at 4472.292 kb on + strand, within ECD_04202 at 4472.328 kb on - strand, within ECD_04202 at 4472.332 kb on - strand, within ECD_04202 at 4472.375 kb on + strand, within ECD_04202 at 4472.510 kb on - strand, within ECD_04202 at 4472.561 kb on - strand, within ECD_04202 at 4472.663 kb on + strand, within ECD_04202 at 4472.663 kb on + strand, within ECD_04202 at 4472.672 kb on + strand, within ECD_04202 at 4472.673 kb on - strand, within ECD_04202 at 4472.705 kb on + strand, within ECD_04202 at 4472.708 kb on + strand, within ECD_04202 at 4472.810 kb on + strand at 4472.895 kb on - strand at 4472.907 kb on + strand at 4472.922 kb on + strand at 4472.925 kb on - strand at 4472.925 kb on - strand at 4473.040 kb on + strand, within ECD_04392 at 4473.041 kb on - strand, within ECD_04392 at 4473.494 kb on + strand, within ECD_04203 at 4473.494 kb on + strand, within ECD_04203 at 4473.495 kb on - strand, within ECD_04203 at 4473.495 kb on - strand, within ECD_04203 at 4473.495 kb on - strand, within ECD_04203 at 4473.816 kb on + strand, within ECD_04203
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 4,471,022 - ECD_04201 0.21 -1.6 4,471,099 + ECD_04201 0.27 -1.0 4,471,260 + ECD_04201 0.41 -1.5 4,471,276 + ECD_04201 0.42 -1.0 4,471,276 + ECD_04201 0.42 -1.2 4,471,276 + ECD_04201 0.42 -0.9 4,471,276 + ECD_04201 0.42 -1.2 4,471,277 - ECD_04201 0.42 -0.8 4,471,277 - ECD_04201 0.42 -1.1 4,471,277 - ECD_04201 0.42 -1.5 4,471,277 - ECD_04201 0.42 -0.5 4,471,277 - ECD_04201 0.42 -0.3 4,471,279 - ECD_04201 0.43 -0.8 4,471,328 + ECD_04201 0.47 -0.5 4,471,396 + ECD_04201 0.53 -0.2 4,471,397 - ECD_04201 0.53 -1.1 4,471,485 + ECD_04201 0.60 +0.1 4,471,486 - ECD_04201 0.60 -1.7 4,471,486 - ECD_04201 0.60 -0.4 4,471,564 + ECD_04201 0.67 -1.2 4,471,749 - ECD_04201 0.83 -1.1 4,471,777 - ECD_04201 0.85 +0.2 4,471,777 - ECD_04201 0.85 -0.3 4,471,777 - ECD_04201 0.85 +0.3 4,471,846 + -1.0 4,471,846 + -0.7 4,471,847 - -0.2 4,471,847 - -0.5 4,471,852 + -2.5 4,471,853 - -0.7 4,471,869 - +0.4 4,471,876 + +0.0 4,471,881 - -0.0 4,471,881 - -0.6 4,471,881 - -0.6 4,471,881 - -0.4 4,472,050 + -1.3 4,472,077 + -1.6 4,472,077 + -0.8 4,472,078 - -0.4 4,472,081 + -0.5 4,472,126 + ECD_04202 0.12 -4.3 4,472,250 - ECD_04202 0.26 -2.1 4,472,292 + ECD_04202 0.31 -0.8 4,472,328 - ECD_04202 0.36 -0.3 4,472,332 - ECD_04202 0.36 -1.4 4,472,375 + ECD_04202 0.41 +0.1 4,472,510 - ECD_04202 0.57 -0.6 4,472,561 - ECD_04202 0.63 -1.2 4,472,663 + ECD_04202 0.74 -0.8 4,472,663 + ECD_04202 0.74 -0.0 4,472,672 + ECD_04202 0.75 -1.3 4,472,673 - ECD_04202 0.76 -2.7 4,472,705 + ECD_04202 0.79 -1.6 4,472,708 + ECD_04202 0.80 -0.5 4,472,810 + -1.6 4,472,895 - +0.3 4,472,907 + -0.6 4,472,922 + -0.3 4,472,925 - -0.5 4,472,925 - -0.5 4,473,040 + ECD_04392 0.36 -0.5 4,473,041 - ECD_04392 0.36 -0.4 4,473,494 + ECD_04203 0.38 -0.7 4,473,494 + ECD_04203 0.38 -1.2 4,473,495 - ECD_04203 0.38 -0.9 4,473,495 - ECD_04203 0.38 -0.7 4,473,495 - ECD_04203 0.38 -0.7 4,473,816 + ECD_04203 0.80 -0.7
Or see this region's nucleotide sequence