Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04041 and ECD_04042 are separated by 2 nucleotides ECD_04042 and ECD_04043 are separated by 81 nucleotides ECD_04043 and ECD_04044 are separated by 103 nucleotides
ECD_04041: ECD_04041 - modulator for HflB protease specific for phage lambda cII repressor, at 4,308,558 to 4,309,817
_04041
ECD_04042: ECD_04042 - HflB protease modulator specific for phage lambda cII repressor, at 4,309,820 to 4,310,824
_04042
ECD_04043: ECD_04043 - DUF2065 family protein, at 4,310,906 to 4,311,103
_04043
ECD_04044: ECD_04044 - adenylosuccinate synthetase, at 4,311,207 to 4,312,505
_04044
Position (kb) 4309
4310
4311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4309.152 kb on + strand, within ECD_04041 at 4309.368 kb on + strand, within ECD_04041 at 4309.412 kb on + strand, within ECD_04041 at 4309.536 kb on + strand, within ECD_04041 at 4309.536 kb on + strand, within ECD_04041 at 4309.868 kb on + strand at 4309.909 kb on + strand at 4309.929 kb on + strand, within ECD_04042 at 4309.986 kb on + strand, within ECD_04042 at 4310.182 kb on + strand, within ECD_04042 at 4310.182 kb on + strand, within ECD_04042 at 4310.317 kb on + strand, within ECD_04042 at 4310.449 kb on + strand, within ECD_04042 at 4310.699 kb on + strand, within ECD_04042 at 4310.823 kb on - strand at 4310.825 kb on + strand at 4310.825 kb on + strand at 4310.827 kb on + strand at 4310.828 kb on - strand at 4311.030 kb on + strand, within ECD_04043 at 4311.030 kb on + strand, within ECD_04043 at 4311.077 kb on + strand, within ECD_04043 at 4311.077 kb on + strand, within ECD_04043 at 4311.077 kb on + strand, within ECD_04043 at 4311.077 kb on + strand, within ECD_04043
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 4,309,152 + ECD_04041 0.47 -2.6 4,309,368 + ECD_04041 0.64 -4.3 4,309,412 + ECD_04041 0.68 -1.5 4,309,536 + ECD_04041 0.78 -2.2 4,309,536 + ECD_04041 0.78 -1.5 4,309,868 + -1.7 4,309,909 + -1.7 4,309,929 + ECD_04042 0.11 -1.1 4,309,986 + ECD_04042 0.17 -2.6 4,310,182 + ECD_04042 0.36 -2.9 4,310,182 + ECD_04042 0.36 -2.4 4,310,317 + ECD_04042 0.49 -2.2 4,310,449 + ECD_04042 0.63 -1.1 4,310,699 + ECD_04042 0.87 -2.2 4,310,823 - -2.7 4,310,825 + -0.4 4,310,825 + -0.4 4,310,827 + +0.3 4,310,828 - -1.4 4,311,030 + ECD_04043 0.63 -1.0 4,311,030 + ECD_04043 0.63 +0.8 4,311,077 + ECD_04043 0.86 -0.4 4,311,077 + ECD_04043 0.86 -1.1 4,311,077 + ECD_04043 0.86 -1.0 4,311,077 + ECD_04043 0.86 -0.7
Or see this region's nucleotide sequence