Strain Fitness in Escherichia coli BL21 around ECD_04039

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04038 and ECD_04039 are separated by 85 nucleotidesECD_04039 and ECD_04040 are separated by 75 nucleotides ECD_04038: ECD_04038 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase, at 4,305,772 to 4,306,722 _04038 ECD_04039: ECD_04039 - global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication, at 4,306,808 to 4,307,116 _04039 ECD_04040: ECD_04040 - GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator, at 4,307,192 to 4,308,472 _04040 Position (kb) 4306 4307 4308Strain fitness (log2 ratio) -2 -1 0 1 2at 4305.878 kb on + strand, within ECD_04038at 4305.906 kb on + strand, within ECD_04038at 4305.906 kb on + strand, within ECD_04038at 4305.984 kb on + strand, within ECD_04038at 4306.710 kb on + strandat 4306.741 kb on + strandat 4306.785 kb on + strandat 4306.785 kb on + strandat 4306.785 kb on + strandat 4306.785 kb on + strandat 4306.791 kb on + strandat 4306.791 kb on + strandat 4306.987 kb on + strand, within ECD_04039at 4307.023 kb on + strand, within ECD_04039at 4307.050 kb on + strand, within ECD_04039at 4307.050 kb on + strand, within ECD_04039at 4307.050 kb on + strand, within ECD_04039at 4307.050 kb on + strand, within ECD_04039at 4307.054 kb on + strand, within ECD_04039at 4307.054 kb on + strand, within ECD_04039at 4307.054 kb on + strand, within ECD_04039at 4307.054 kb on + strand, within ECD_04039at 4307.054 kb on + strand, within ECD_04039at 4307.054 kb on + strand, within ECD_04039at 4307.065 kb on + strand, within ECD_04039at 4307.080 kb on + strand, within ECD_04039at 4307.173 kb on + strandat 4307.177 kb on + strandat 4307.185 kb on + strandat 4307.187 kb on + strandat 4307.187 kb on + strandat 4307.187 kb on + strandat 4307.187 kb on + strandat 4307.187 kb on + strandat 4307.240 kb on + strandat 4307.551 kb on + strand, within ECD_04040at 4307.551 kb on + strand, within ECD_04040at 4307.806 kb on + strand, within ECD_04040at 4307.905 kb on + strand, within ECD_04040at 4307.934 kb on + strand, within ECD_04040at 4307.949 kb on + strand, within ECD_04040at 4307.949 kb on + strand, within ECD_04040at 4307.992 kb on + strand, within ECD_04040at 4307.992 kb on + strand, within ECD_04040at 4308.027 kb on + strand, within ECD_04040at 4308.063 kb on + strand, within ECD_04040

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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4,305,878 + ECD_04038 0.11 +0.1
4,305,906 + ECD_04038 0.14 -2.1
4,305,906 + ECD_04038 0.14 -0.5
4,305,984 + ECD_04038 0.22 -1.5
4,306,710 + +0.3
4,306,741 + +0.2
4,306,785 + -1.3
4,306,785 + -0.2
4,306,785 + +0.8
4,306,785 + -0.9
4,306,791 + -1.7
4,306,791 + -0.5
4,306,987 + ECD_04039 0.58 -1.3
4,307,023 + ECD_04039 0.70 -0.3
4,307,050 + ECD_04039 0.78 +0.3
4,307,050 + ECD_04039 0.78 +0.5
4,307,050 + ECD_04039 0.78 -0.5
4,307,050 + ECD_04039 0.78 -0.2
4,307,054 + ECD_04039 0.80 -0.1
4,307,054 + ECD_04039 0.80 -0.0
4,307,054 + ECD_04039 0.80 +0.5
4,307,054 + ECD_04039 0.80 +0.7
4,307,054 + ECD_04039 0.80 +0.0
4,307,054 + ECD_04039 0.80 -0.5
4,307,065 + ECD_04039 0.83 -1.7
4,307,080 + ECD_04039 0.88 +0.1
4,307,173 + +0.7
4,307,177 + -0.3
4,307,185 + -1.2
4,307,187 + -0.7
4,307,187 + -1.2
4,307,187 + -1.8
4,307,187 + -0.7
4,307,187 + -1.7
4,307,240 + -1.6
4,307,551 + ECD_04040 0.28 -0.4
4,307,551 + ECD_04040 0.28 -0.7
4,307,806 + ECD_04040 0.48 -1.2
4,307,905 + ECD_04040 0.56 +1.9
4,307,934 + ECD_04040 0.58 +2.1
4,307,949 + ECD_04040 0.59 +0.9
4,307,949 + ECD_04040 0.59 +0.2
4,307,992 + ECD_04040 0.62 +0.2
4,307,992 + ECD_04040 0.62 +0.8
4,308,027 + ECD_04040 0.65 +0.0
4,308,063 + ECD_04040 0.68 +0.0

Or see this region's nucleotide sequence