Strain Fitness in Escherichia coli BL21 around ECD_03995

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03994 and ECD_03995 are separated by 570 nucleotides ECD_03994: ECD_03994 - C4-dicarboxylate transporter, anaerobic; DcuS co-sensor, at 4,254,484 to 4,255,824 _03994 ECD_03995: ECD_03995 - response regulator in two-component regulatory system with DcuS, at 4,256,395 to 4,257,114 _03995 Position (kb) 4256 4257 4258Strain fitness (log2 ratio) -3 -2 -1 0 1at 4255.458 kb on + strand, within ECD_03994at 4255.472 kb on + strand, within ECD_03994at 4255.472 kb on + strand, within ECD_03994at 4255.473 kb on - strand, within ECD_03994at 4255.473 kb on - strand, within ECD_03994at 4255.530 kb on + strand, within ECD_03994at 4255.562 kb on + strand, within ECD_03994at 4255.562 kb on + strand, within ECD_03994at 4255.562 kb on + strand, within ECD_03994at 4255.563 kb on - strand, within ECD_03994at 4255.690 kb on - strand, within ECD_03994at 4255.741 kb on + strandat 4255.745 kb on - strandat 4255.778 kb on + strandat 4255.790 kb on - strandat 4255.796 kb on - strandat 4255.951 kb on - strandat 4256.292 kb on + strandat 4256.522 kb on + strand, within ECD_03995at 4256.527 kb on - strand, within ECD_03995at 4256.623 kb on + strand, within ECD_03995at 4256.692 kb on + strand, within ECD_03995at 4256.718 kb on - strand, within ECD_03995at 4256.720 kb on + strand, within ECD_03995at 4256.915 kb on - strand, within ECD_03995at 4256.940 kb on + strand, within ECD_03995at 4256.942 kb on + strand, within ECD_03995at 4256.942 kb on + strand, within ECD_03995at 4256.942 kb on + strand, within ECD_03995at 4256.946 kb on + strand, within ECD_03995at 4257.052 kb on + strandat 4257.096 kb on + strandat 4257.100 kb on + strandat 4257.323 kb on + strandat 4257.324 kb on - strandat 4257.363 kb on + strandat 4257.503 kb on + strandat 4257.601 kb on + strandat 4257.625 kb on + strandat 4257.684 kb on - strandat 4257.724 kb on + strandat 4257.724 kb on + strandat 4257.758 kb on + strandat 4257.758 kb on + strandat 4257.763 kb on - strandat 4257.840 kb on + strandat 4257.840 kb on + strandat 4257.843 kb on + strandat 4257.855 kb on - strandat 4257.860 kb on + strandat 4257.917 kb on + strandat 4257.917 kb on + strandat 4257.918 kb on - strandat 4257.918 kb on - strandat 4257.979 kb on - strandat 4257.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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4,255,458 + ECD_03994 0.73 -1.3
4,255,472 + ECD_03994 0.74 -0.9
4,255,472 + ECD_03994 0.74 -1.0
4,255,473 - ECD_03994 0.74 -0.7
4,255,473 - ECD_03994 0.74 -1.1
4,255,530 + ECD_03994 0.78 -0.1
4,255,562 + ECD_03994 0.80 -2.3
4,255,562 + ECD_03994 0.80 -0.8
4,255,562 + ECD_03994 0.80 +0.3
4,255,563 - ECD_03994 0.80 -0.4
4,255,690 - ECD_03994 0.90 -0.4
4,255,741 + -2.3
4,255,745 - +0.3
4,255,778 + -2.2
4,255,790 - -0.5
4,255,796 - -0.2
4,255,951 - -0.0
4,256,292 + -0.1
4,256,522 + ECD_03995 0.18 -0.5
4,256,527 - ECD_03995 0.18 -1.9
4,256,623 + ECD_03995 0.32 -0.2
4,256,692 + ECD_03995 0.41 -0.9
4,256,718 - ECD_03995 0.45 -2.6
4,256,720 + ECD_03995 0.45 -2.0
4,256,915 - ECD_03995 0.72 -0.8
4,256,940 + ECD_03995 0.76 -0.6
4,256,942 + ECD_03995 0.76 +0.5
4,256,942 + ECD_03995 0.76 -0.4
4,256,942 + ECD_03995 0.76 +0.0
4,256,946 + ECD_03995 0.77 -0.8
4,257,052 + -1.3
4,257,096 + -1.3
4,257,100 + -1.1
4,257,323 + -0.8
4,257,324 - -0.9
4,257,363 + -0.6
4,257,503 + -2.3
4,257,601 + +0.1
4,257,625 + -2.8
4,257,684 - -1.0
4,257,724 + -1.5
4,257,724 + -1.0
4,257,758 + -0.0
4,257,758 + -1.0
4,257,763 - -1.0
4,257,840 + +0.0
4,257,840 + -0.5
4,257,843 + -0.9
4,257,855 - -0.1
4,257,860 + -0.0
4,257,917 + -0.4
4,257,917 + -0.9
4,257,918 - -1.4
4,257,918 - -0.9
4,257,979 - -0.3
4,257,979 - +0.1

Or see this region's nucleotide sequence